Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0726

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0725 and Rru_A0726 overlap by 4 nucleotidesRru_A0726 and Rru_A0727 overlap by 4 nucleotidesRru_A0727 and Rru_A0728 overlap by 29 nucleotides Rru_A0725: Rru_A0725 - Cyclopropane-fatty-acyl-phospholipid synthase (NCBI), at 853,113 to 854,396 _A0725 Rru_A0726: Rru_A0726 - Major facilitator superfamily MFS_1 (NCBI), at 854,393 to 855,799 _A0726 Rru_A0727: Rru_A0727 - hypothetical protein (NCBI), at 855,796 to 856,410 _A0727 Rru_A0728: Rru_A0728 - hypothetical protein (NCBI), at 856,382 to 856,843 _A0728 Position (kb) 854 855 856Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 853.396 kb on + strand, within Rru_A0725at 853.566 kb on + strand, within Rru_A0725at 853.566 kb on + strand, within Rru_A0725at 853.567 kb on - strand, within Rru_A0725at 853.567 kb on - strand, within Rru_A0725at 853.587 kb on + strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.588 kb on - strand, within Rru_A0725at 853.617 kb on + strand, within Rru_A0725at 853.618 kb on - strand, within Rru_A0725at 853.678 kb on - strand, within Rru_A0725at 853.678 kb on - strand, within Rru_A0725at 853.887 kb on + strand, within Rru_A0725at 853.887 kb on + strand, within Rru_A0725at 853.888 kb on - strand, within Rru_A0725at 853.888 kb on - strand, within Rru_A0725at 853.969 kb on - strand, within Rru_A0725at 853.969 kb on - strand, within Rru_A0725at 854.055 kb on + strand, within Rru_A0725at 854.087 kb on + strand, within Rru_A0725at 854.087 kb on + strand, within Rru_A0725at 854.087 kb on + strand, within Rru_A0725at 854.087 kb on + strand, within Rru_A0725at 854.088 kb on - strand, within Rru_A0725at 854.088 kb on - strand, within Rru_A0725at 854.088 kb on - strand, within Rru_A0725at 854.135 kb on + strand, within Rru_A0725at 854.187 kb on + strand, within Rru_A0725at 854.188 kb on - strand, within Rru_A0725at 854.188 kb on - strand, within Rru_A0725at 854.289 kb on + strandat 854.289 kb on + strandat 854.290 kb on - strandat 854.292 kb on + strandat 854.292 kb on + strandat 854.292 kb on + strandat 854.293 kb on - strandat 854.302 kb on - strandat 854.302 kb on - strandat 854.346 kb on + strandat 854.347 kb on - strandat 854.347 kb on - strandat 854.347 kb on - strandat 854.453 kb on + strandat 854.669 kb on + strand, within Rru_A0726at 854.669 kb on + strand, within Rru_A0726at 854.670 kb on - strand, within Rru_A0726at 854.670 kb on - strand, within Rru_A0726at 854.747 kb on + strand, within Rru_A0726at 854.748 kb on - strand, within Rru_A0726at 854.804 kb on + strand, within Rru_A0726at 854.804 kb on + strand, within Rru_A0726at 854.804 kb on + strand, within Rru_A0726at 854.804 kb on + strand, within Rru_A0726at 854.804 kb on + strand, within Rru_A0726at 854.805 kb on - strand, within Rru_A0726at 854.805 kb on - strand, within Rru_A0726at 854.807 kb on - strand, within Rru_A0726at 854.807 kb on - strand, within Rru_A0726at 854.837 kb on + strand, within Rru_A0726at 854.838 kb on - strand, within Rru_A0726at 855.230 kb on + strand, within Rru_A0726at 855.230 kb on + strand, within Rru_A0726at 855.231 kb on - strand, within Rru_A0726at 855.641 kb on + strand, within Rru_A0726at 855.641 kb on + strand, within Rru_A0726at 855.642 kb on - strand, within Rru_A0726at 855.642 kb on - strand, within Rru_A0726at 855.916 kb on + strand, within Rru_A0727at 855.916 kb on + strand, within Rru_A0727at 855.993 kb on + strand, within Rru_A0727at 856.217 kb on + strand, within Rru_A0727at 856.217 kb on + strand, within Rru_A0727at 856.218 kb on - strand, within Rru_A0727at 856.383 kb on + strandat 856.383 kb on + strandat 856.383 kb on + strandat 856.384 kb on - strandat 856.446 kb on + strand, within Rru_A0728at 856.446 kb on + strand, within Rru_A0728at 856.447 kb on - strand, within Rru_A0728at 856.447 kb on - strand, within Rru_A0728at 856.651 kb on + strand, within Rru_A0728at 856.651 kb on + strand, within Rru_A0728at 856.651 kb on + strand, within Rru_A0728at 856.651 kb on + strand, within Rru_A0728at 856.651 kb on + strand, within Rru_A0728at 856.652 kb on - strand, within Rru_A0728at 856.652 kb on - strand, within Rru_A0728at 856.652 kb on - strand, within Rru_A0728at 856.652 kb on - strand, within Rru_A0728at 856.658 kb on + strand, within Rru_A0728at 856.658 kb on + strand, within Rru_A0728at 856.658 kb on + strand, within Rru_A0728at 856.658 kb on + strand, within Rru_A0728at 856.773 kb on + strand, within Rru_A0728at 856.773 kb on + strand, within Rru_A0728at 856.773 kb on + strand, within Rru_A0728at 856.773 kb on + strand, within Rru_A0728at 856.774 kb on - strand, within Rru_A0728at 856.774 kb on - strand, within Rru_A0728at 856.774 kb on - strand, within Rru_A0728at 856.774 kb on - strand, within Rru_A0728at 856.785 kb on + strand, within Rru_A0728at 856.786 kb on - strand, within Rru_A0728at 856.786 kb on - strand, within Rru_A0728

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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853,396 + Rru_A0725 0.22 -0.1
853,566 + Rru_A0725 0.35 +1.8
853,566 + Rru_A0725 0.35 +0.4
853,567 - Rru_A0725 0.35 -1.5
853,567 - Rru_A0725 0.35 +0.0
853,587 + Rru_A0725 0.37 -0.8
853,588 - Rru_A0725 0.37 -1.9
853,588 - Rru_A0725 0.37 +0.4
853,588 - Rru_A0725 0.37 -2.4
853,588 - Rru_A0725 0.37 +3.0
853,588 - Rru_A0725 0.37 -1.1
853,588 - Rru_A0725 0.37 -1.0
853,588 - Rru_A0725 0.37 +0.2
853,617 + Rru_A0725 0.39 +0.2
853,618 - Rru_A0725 0.39 -2.1
853,678 - Rru_A0725 0.44 +0.0
853,678 - Rru_A0725 0.44 -1.9
853,887 + Rru_A0725 0.60 -1.2
853,887 + Rru_A0725 0.60 +1.5
853,888 - Rru_A0725 0.60 -0.5
853,888 - Rru_A0725 0.60 -1.9
853,969 - Rru_A0725 0.67 -0.1
853,969 - Rru_A0725 0.67 -3.2
854,055 + Rru_A0725 0.73 -2.4
854,087 + Rru_A0725 0.76 -2.1
854,087 + Rru_A0725 0.76 +0.8
854,087 + Rru_A0725 0.76 -2.9
854,087 + Rru_A0725 0.76 +0.9
854,088 - Rru_A0725 0.76 -1.6
854,088 - Rru_A0725 0.76 -0.4
854,088 - Rru_A0725 0.76 -2.9
854,135 + Rru_A0725 0.80 -0.1
854,187 + Rru_A0725 0.84 +0.3
854,188 - Rru_A0725 0.84 -1.9
854,188 - Rru_A0725 0.84 -2.0
854,289 + +0.2
854,289 + +0.2
854,290 - -0.9
854,292 + -0.1
854,292 + -0.5
854,292 + -1.0
854,293 - -2.4
854,302 - +0.7
854,302 - +0.4
854,346 + -0.2
854,347 - +0.5
854,347 - +2.0
854,347 - +0.9
854,453 + -1.5
854,669 + Rru_A0726 0.20 -3.2
854,669 + Rru_A0726 0.20 +0.3
854,670 - Rru_A0726 0.20 +1.8
854,670 - Rru_A0726 0.20 -0.7
854,747 + Rru_A0726 0.25 -0.7
854,748 - Rru_A0726 0.25 +0.2
854,804 + Rru_A0726 0.29 +1.8
854,804 + Rru_A0726 0.29 -1.6
854,804 + Rru_A0726 0.29 +0.9
854,804 + Rru_A0726 0.29 +0.7
854,804 + Rru_A0726 0.29 -0.7
854,805 - Rru_A0726 0.29 -2.3
854,805 - Rru_A0726 0.29 +4.4
854,807 - Rru_A0726 0.29 -1.5
854,807 - Rru_A0726 0.29 -2.4
854,837 + Rru_A0726 0.32 +1.7
854,838 - Rru_A0726 0.32 +1.8
855,230 + Rru_A0726 0.59 -3.3
855,230 + Rru_A0726 0.59 +1.1
855,231 - Rru_A0726 0.60 -0.1
855,641 + Rru_A0726 0.89 -0.3
855,641 + Rru_A0726 0.89 -3.3
855,642 - Rru_A0726 0.89 -0.5
855,642 - Rru_A0726 0.89 -0.3
855,916 + Rru_A0727 0.20 -2.0
855,916 + Rru_A0727 0.20 +0.3
855,993 + Rru_A0727 0.32 -1.0
856,217 + Rru_A0727 0.68 +0.2
856,217 + Rru_A0727 0.68 +0.5
856,218 - Rru_A0727 0.69 -0.7
856,383 + -1.2
856,383 + -2.5
856,383 + -0.2
856,384 - -0.4
856,446 + Rru_A0728 0.14 +0.4
856,446 + Rru_A0728 0.14 -0.8
856,447 - Rru_A0728 0.14 +0.7
856,447 - Rru_A0728 0.14 -0.5
856,651 + Rru_A0728 0.58 +2.5
856,651 + Rru_A0728 0.58 +0.2
856,651 + Rru_A0728 0.58 +0.8
856,651 + Rru_A0728 0.58 -0.5
856,651 + Rru_A0728 0.58 -0.5
856,652 - Rru_A0728 0.58 +1.0
856,652 - Rru_A0728 0.58 -0.1
856,652 - Rru_A0728 0.58 -0.4
856,652 - Rru_A0728 0.58 +2.4
856,658 + Rru_A0728 0.60 -0.8
856,658 + Rru_A0728 0.60 +3.4
856,658 + Rru_A0728 0.60 -1.6
856,658 + Rru_A0728 0.60 +0.4
856,773 + Rru_A0728 0.85 -0.9
856,773 + Rru_A0728 0.85 +0.8
856,773 + Rru_A0728 0.85 -0.2
856,773 + Rru_A0728 0.85 -0.6
856,774 - Rru_A0728 0.85 -2.9
856,774 - Rru_A0728 0.85 -1.0
856,774 - Rru_A0728 0.85 +0.5
856,774 - Rru_A0728 0.85 -1.5
856,785 + Rru_A0728 0.87 +1.9
856,786 - Rru_A0728 0.87 -3.0
856,786 - Rru_A0728 0.87 -0.5

Or see this region's nucleotide sequence