Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0711 and Rru_A0712 are separated by 190 nucleotides Rru_A0712 and Rru_A0713 are separated by 115 nucleotides Rru_A0713 and Rru_A0714 are separated by 195 nucleotides Rru_A0714 and Rru_A0715 are separated by 32 nucleotides
Rru_A0711: Rru_A0711 - phosphoribosylaminoimidazole-succinocarboxamidesynthase (RefSeq), at 838,755 to 839,522
_A0711
Rru_A0712: Rru_A0712 - Transcriptional Regulator, XRE family (NCBI), at 839,713 to 840,306
_A0712
Rru_A0713: Rru_A0713 - Protein of unknown function DUF833 (NCBI), at 840,422 to 841,198
_A0713
Rru_A0714: Rru_A0714 - Protein of unknown function DUF1476 (NCBI), at 841,394 to 841,732
_A0714
Rru_A0715: Rru_A0715 - Mg2+ transporter protein, CorA-like (NCBI), at 841,765 to 842,805
_A0715
Position (kb) 840
841
842 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 839.652 kb on - strand at 839.682 kb on + strand at 839.682 kb on + strand at 839.683 kb on - strand at 839.683 kb on - strand at 839.683 kb on - strand at 839.683 kb on - strand at 840.206 kb on + strand, within Rru_A0712 at 840.209 kb on + strand, within Rru_A0712 at 840.209 kb on + strand, within Rru_A0712 at 840.367 kb on + strand at 840.367 kb on + strand at 840.368 kb on - strand at 840.370 kb on + strand at 840.370 kb on + strand at 840.370 kb on + strand at 840.370 kb on + strand at 840.370 kb on + strand at 840.370 kb on + strand at 840.370 kb on + strand at 840.370 kb on + strand at 840.371 kb on - strand at 840.371 kb on - strand at 840.371 kb on - strand at 840.371 kb on - strand at 840.371 kb on - strand at 840.374 kb on + strand at 840.456 kb on + strand at 840.457 kb on - strand at 840.489 kb on - strand at 840.492 kb on + strand at 840.492 kb on + strand at 840.492 kb on + strand at 840.493 kb on - strand at 840.867 kb on + strand, within Rru_A0713 at 840.923 kb on - strand, within Rru_A0713 at 841.192 kb on + strand at 841.192 kb on + strand at 841.193 kb on - strand at 841.193 kb on - strand at 841.193 kb on - strand at 841.283 kb on - strand at 841.287 kb on + strand at 841.287 kb on + strand at 841.287 kb on + strand at 841.288 kb on - strand at 841.293 kb on + strand at 841.305 kb on - strand at 841.362 kb on - strand at 841.439 kb on + strand, within Rru_A0714 at 841.440 kb on - strand, within Rru_A0714 at 841.440 kb on - strand, within Rru_A0714 at 841.440 kb on - strand, within Rru_A0714 at 841.548 kb on - strand, within Rru_A0714 at 841.642 kb on + strand, within Rru_A0714 at 841.788 kb on + strand at 841.788 kb on + strand at 841.789 kb on - strand at 841.790 kb on + strand at 841.790 kb on + strand at 841.790 kb on + strand at 841.791 kb on - strand at 841.791 kb on - strand at 841.946 kb on + strand, within Rru_A0715 at 841.946 kb on + strand, within Rru_A0715 at 842.040 kb on - strand, within Rru_A0715 at 842.040 kb on - strand, within Rru_A0715
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 839,652 - +0.1 839,682 + -1.3 839,682 + -2.7 839,683 - -2.7 839,683 - +1.0 839,683 - -2.6 839,683 - +1.3 840,206 + Rru_A0712 0.83 -3.0 840,209 + Rru_A0712 0.84 +1.5 840,209 + Rru_A0712 0.84 +0.2 840,367 + -0.5 840,367 + -0.2 840,368 - +0.2 840,370 + -1.8 840,370 + +1.6 840,370 + +0.8 840,370 + +1.2 840,370 + -0.2 840,370 + -0.7 840,370 + -3.2 840,370 + -1.1 840,371 - -1.4 840,371 - +0.2 840,371 - +1.7 840,371 - -1.2 840,371 - -0.2 840,374 + -0.1 840,456 + -1.0 840,457 - -0.5 840,489 - +1.9 840,492 + +0.2 840,492 + -0.8 840,492 + -1.3 840,493 - +1.8 840,867 + Rru_A0713 0.57 +1.8 840,923 - Rru_A0713 0.64 -1.0 841,192 + -0.2 841,192 + -0.2 841,193 - -2.1 841,193 - +1.8 841,193 - -0.3 841,283 - +0.6 841,287 + +1.8 841,287 + +0.3 841,287 + -1.3 841,288 - -0.6 841,293 + +1.0 841,305 - -0.1 841,362 - -1.2 841,439 + Rru_A0714 0.13 +0.7 841,440 - Rru_A0714 0.14 +0.2 841,440 - Rru_A0714 0.14 -1.5 841,440 - Rru_A0714 0.14 +0.4 841,548 - Rru_A0714 0.45 -0.3 841,642 + Rru_A0714 0.73 -1.1 841,788 + -0.4 841,788 + +0.9 841,789 - +0.5 841,790 + -2.3 841,790 + -0.2 841,790 + -0.2 841,791 - -0.2 841,791 - -1.0 841,946 + Rru_A0715 0.17 -1.2 841,946 + Rru_A0715 0.17 -1.2 842,040 - Rru_A0715 0.26 +0.2 842,040 - Rru_A0715 0.26 -0.4
Or see this region's nucleotide sequence