Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0710

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0708 and Rru_A0709 overlap by 4 nucleotidesRru_A0709 and Rru_A0710 are separated by 29 nucleotidesRru_A0710 and Rru_A0711 are separated by 77 nucleotides Rru_A0708: Rru_A0708 - Phosphoribosylformylglycinamidine synthase II (NCBI), at 835,476 to 837,698 _A0708 Rru_A0709: Rru_A0709 - Phosphoribosylformylglycinamidine synthase I (NCBI), at 837,695 to 838,387 _A0709 Rru_A0710: Rru_A0710 - Phosphoribosylformylglycinamidine synthetase PurS (NCBI), at 838,417 to 838,677 _A0710 Rru_A0711: Rru_A0711 - phosphoribosylaminoimidazole-succinocarboxamidesynthase (RefSeq), at 838,755 to 839,522 _A0711 Position (kb) 838 839Strain fitness (log2 ratio) -1 0 1 2at 837.946 kb on - strand, within Rru_A0709at 838.320 kb on - strandat 838.736 kb on + strandat 838.736 kb on + strandat 838.737 kb on - strandat 839.652 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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837,946 - Rru_A0709 0.36 +1.8
838,320 - -1.0
838,736 + +0.2
838,736 + -1.6
838,737 - -1.2
839,652 - +0.1

Or see this region's nucleotide sequence