Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0695 and Rru_A0696 are separated by 4 nucleotides Rru_A0696 and Rru_A0697 overlap by 4 nucleotides
Rru_A0695: Rru_A0695 - 2-isopropylmalate synthase/homocitrate synthase (NCBI), at 823,804 to 825,405
_A0695
Rru_A0696: Rru_A0696 - RNA methyltransferase TrmH, group 1 (NCBI), at 825,410 to 826,249
_A0696
Rru_A0697: Rru_A0697 - Multi antimicrobial extrusion protein MatE (NCBI), at 826,246 to 827,652
_A0697
Position (kb) 825
826
827 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 824.455 kb on - strand, within Rru_A0695 at 824.455 kb on - strand, within Rru_A0695 at 824.455 kb on - strand, within Rru_A0695 at 824.747 kb on - strand, within Rru_A0695 at 824.755 kb on - strand, within Rru_A0695 at 824.926 kb on + strand, within Rru_A0695 at 825.100 kb on + strand, within Rru_A0695 at 825.100 kb on + strand, within Rru_A0695 at 825.100 kb on + strand, within Rru_A0695 at 825.100 kb on + strand, within Rru_A0695 at 825.101 kb on - strand, within Rru_A0695 at 825.101 kb on - strand, within Rru_A0695 at 825.102 kb on + strand, within Rru_A0695 at 825.175 kb on + strand, within Rru_A0695 at 825.208 kb on + strand, within Rru_A0695 at 825.219 kb on + strand, within Rru_A0695 at 825.322 kb on - strand at 825.337 kb on + strand at 825.337 kb on + strand at 825.337 kb on + strand at 825.337 kb on + strand at 825.338 kb on - strand at 825.340 kb on - strand at 825.340 kb on - strand at 825.364 kb on + strand at 825.364 kb on + strand at 825.364 kb on + strand at 825.365 kb on - strand at 825.366 kb on + strand at 825.366 kb on + strand at 825.367 kb on - strand at 825.407 kb on - strand at 825.872 kb on + strand, within Rru_A0696 at 825.923 kb on + strand, within Rru_A0696 at 826.524 kb on + strand, within Rru_A0697 at 826.525 kb on - strand, within Rru_A0697 at 826.563 kb on - strand, within Rru_A0697 at 826.714 kb on + strand, within Rru_A0697 at 826.714 kb on + strand, within Rru_A0697 at 826.714 kb on + strand, within Rru_A0697 at 826.716 kb on + strand, within Rru_A0697 at 826.717 kb on - strand, within Rru_A0697 at 826.717 kb on - strand, within Rru_A0697 at 826.717 kb on - strand, within Rru_A0697 at 826.945 kb on + strand, within Rru_A0697
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 824,455 - Rru_A0695 0.41 +1.8 824,455 - Rru_A0695 0.41 -2.1 824,455 - Rru_A0695 0.41 -1.0 824,747 - Rru_A0695 0.59 +2.6 824,755 - Rru_A0695 0.59 +0.0 824,926 + Rru_A0695 0.70 -0.1 825,100 + Rru_A0695 0.81 +1.2 825,100 + Rru_A0695 0.81 -0.8 825,100 + Rru_A0695 0.81 -0.5 825,100 + Rru_A0695 0.81 +0.2 825,101 - Rru_A0695 0.81 +1.8 825,101 - Rru_A0695 0.81 +0.6 825,102 + Rru_A0695 0.81 -1.8 825,175 + Rru_A0695 0.86 +0.8 825,208 + Rru_A0695 0.88 -0.6 825,219 + Rru_A0695 0.88 -0.5 825,322 - -3.6 825,337 + +0.8 825,337 + +3.6 825,337 + +2.5 825,337 + +1.4 825,338 - -3.1 825,340 - -1.2 825,340 - +0.5 825,364 + +0.0 825,364 + +0.6 825,364 + +0.6 825,365 - +0.8 825,366 + -0.8 825,366 + +2.0 825,367 - -0.0 825,407 - -1.4 825,872 + Rru_A0696 0.55 -2.6 825,923 + Rru_A0696 0.61 -2.3 826,524 + Rru_A0697 0.20 -1.4 826,525 - Rru_A0697 0.20 -0.5 826,563 - Rru_A0697 0.23 -1.6 826,714 + Rru_A0697 0.33 -0.2 826,714 + Rru_A0697 0.33 -2.4 826,714 + Rru_A0697 0.33 -1.5 826,716 + Rru_A0697 0.33 -3.4 826,717 - Rru_A0697 0.33 -2.0 826,717 - Rru_A0697 0.33 -1.7 826,717 - Rru_A0697 0.33 -0.0 826,945 + Rru_A0697 0.50 -3.9
Or see this region's nucleotide sequence