Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0687

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0686 and Rru_A0687 are separated by 85 nucleotidesRru_A0687 and Rru_A0688 are separated by 33 nucleotides Rru_A0686: Rru_A0686 - Transcriptional Regulator, LysR family (NCBI), at 810,066 to 810,950 _A0686 Rru_A0687: Rru_A0687 - NAD(+) synthase (glutamine-hydrolyzing) (NCBI), at 811,036 to 812,712 _A0687 Rru_A0688: Rru_A0688 - Glutamyl-tRNA synthetase (NCBI), at 812,746 to 814,080 _A0688 Position (kb) 811 812 813Strain fitness (log2 ratio) -2 -1 0 1at 810.679 kb on - strand, within Rru_A0686at 810.679 kb on - strand, within Rru_A0686

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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810,679 - Rru_A0686 0.69 -0.2
810,679 - Rru_A0686 0.69 -1.9

Or see this region's nucleotide sequence