Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0681 and Rru_A0682 are separated by 141 nucleotides Rru_A0682 and Rru_A0683 are separated by 212 nucleotides
Rru_A0681: Rru_A0681 - hypothetical protein (NCBI), at 804,033 to 804,701
_A0681
Rru_A0682: Rru_A0682 - Glutathione reductase (NCBI), at 804,843 to 806,222
_A0682
Rru_A0683: Rru_A0683 - 3-deoxy-7-phosphoheptulonate synthase (NCBI), at 806,435 to 807,820
_A0683
Position (kb) 804
805
806
807 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 803.879 kb on - strand at 803.898 kb on + strand at 803.898 kb on + strand at 803.899 kb on - strand at 803.899 kb on - strand at 803.899 kb on - strand at 803.899 kb on - strand at 803.899 kb on - strand at 803.904 kb on + strand at 803.904 kb on + strand at 803.919 kb on + strand at 803.920 kb on - strand at 804.010 kb on + strand at 804.010 kb on + strand at 804.311 kb on + strand, within Rru_A0681 at 804.311 kb on + strand, within Rru_A0681 at 804.311 kb on + strand, within Rru_A0681 at 804.311 kb on + strand, within Rru_A0681 at 804.312 kb on - strand, within Rru_A0681 at 804.312 kb on - strand, within Rru_A0681 at 804.312 kb on - strand, within Rru_A0681 at 804.693 kb on + strand at 804.695 kb on + strand at 804.695 kb on + strand at 804.695 kb on + strand at 804.695 kb on + strand at 804.696 kb on - strand at 804.758 kb on + strand at 804.799 kb on + strand at 804.799 kb on + strand at 804.800 kb on - strand at 804.800 kb on - strand at 804.800 kb on - strand at 804.818 kb on + strand at 804.818 kb on + strand at 804.819 kb on - strand at 804.869 kb on + strand at 805.618 kb on - strand, within Rru_A0682 at 805.846 kb on - strand, within Rru_A0682 at 806.220 kb on + strand at 806.220 kb on + strand at 806.325 kb on + strand at 806.325 kb on + strand at 806.327 kb on + strand at 806.327 kb on + strand at 806.415 kb on + strand at 806.415 kb on + strand at 806.415 kb on + strand at 806.415 kb on + strand at 807.158 kb on + strand, within Rru_A0683 at 807.158 kb on + strand, within Rru_A0683
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 803,879 - +2.1 803,898 + +3.2 803,898 + +0.9 803,899 - +0.2 803,899 - +0.2 803,899 - -1.0 803,899 - -0.4 803,899 - -0.0 803,904 + +1.0 803,904 + -0.8 803,919 + +1.9 803,920 - +1.0 804,010 + +2.3 804,010 + +1.0 804,311 + Rru_A0681 0.42 -1.3 804,311 + Rru_A0681 0.42 -0.0 804,311 + Rru_A0681 0.42 +2.1 804,311 + Rru_A0681 0.42 +1.2 804,312 - Rru_A0681 0.42 -0.5 804,312 - Rru_A0681 0.42 -0.4 804,312 - Rru_A0681 0.42 -0.2 804,693 + +2.9 804,695 + +2.2 804,695 + -0.2 804,695 + +3.0 804,695 + +2.5 804,696 - -1.2 804,758 + +1.1 804,799 + +2.2 804,799 + -0.2 804,800 - +1.8 804,800 - -0.8 804,800 - +0.8 804,818 + +2.2 804,818 + +2.8 804,819 - +1.8 804,869 + +1.8 805,618 - Rru_A0682 0.56 +1.8 805,846 - Rru_A0682 0.73 +0.8 806,220 + -1.0 806,220 + -1.9 806,325 + +1.9 806,325 + -1.5 806,327 + +0.3 806,327 + -1.0 806,415 + -0.1 806,415 + -0.5 806,415 + +0.6 806,415 + -2.7 807,158 + Rru_A0683 0.52 +1.8 807,158 + Rru_A0683 0.52 +1.8
Or see this region's nucleotide sequence