Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0675 and Rru_A0676 are separated by 260 nucleotides Rru_A0676 and Rru_A0677 are separated by 120 nucleotides Rru_A0677 and Rru_A0678 overlap by 4 nucleotides
Rru_A0675: Rru_A0675 - hypothetical protein (NCBI), at 797,870 to 798,844
_A0675
Rru_A0676: Rru_A0676 - Transposase IS116/IS110/IS902 (NCBI), at 799,105 to 800,136
_A0676
Rru_A0677: Rru_A0677 - hypothetical protein (NCBI), at 800,257 to 800,802
_A0677
Rru_A0678: Rru_A0678 - Multi antimicrobial extrusion protein MatE (NCBI), at 800,799 to 802,190
_A0678
Position (kb) 799
800
801 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 798.143 kb on + strand, within Rru_A0675 at 798.144 kb on - strand, within Rru_A0675 at 798.237 kb on + strand, within Rru_A0675 at 798.340 kb on + strand, within Rru_A0675 at 798.341 kb on - strand, within Rru_A0675 at 798.370 kb on - strand, within Rru_A0675 at 798.532 kb on + strand, within Rru_A0675 at 798.540 kb on + strand, within Rru_A0675 at 798.543 kb on + strand, within Rru_A0675 at 798.835 kb on + strand at 798.977 kb on - strand at 799.018 kb on - strand at 800.275 kb on - strand at 800.275 kb on - strand at 800.275 kb on - strand at 800.275 kb on - strand at 800.364 kb on + strand, within Rru_A0677 at 800.404 kb on + strand, within Rru_A0677 at 800.404 kb on + strand, within Rru_A0677 at 800.404 kb on + strand, within Rru_A0677 at 800.405 kb on - strand, within Rru_A0677 at 800.427 kb on + strand, within Rru_A0677 at 800.428 kb on - strand, within Rru_A0677 at 800.572 kb on + strand, within Rru_A0677 at 800.572 kb on + strand, within Rru_A0677 at 800.573 kb on - strand, within Rru_A0677 at 800.573 kb on - strand, within Rru_A0677 at 800.573 kb on - strand, within Rru_A0677 at 800.949 kb on + strand, within Rru_A0678 at 800.950 kb on - strand, within Rru_A0678 at 801.028 kb on + strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.029 kb on - strand, within Rru_A0678 at 801.030 kb on + strand, within Rru_A0678 at 801.030 kb on + strand, within Rru_A0678 at 801.030 kb on + strand, within Rru_A0678 at 801.065 kb on - strand, within Rru_A0678 at 801.077 kb on + strand, within Rru_A0678 at 801.077 kb on + strand, within Rru_A0678 at 801.078 kb on - strand, within Rru_A0678 at 801.087 kb on + strand, within Rru_A0678
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 798,143 + Rru_A0675 0.28 -0.9 798,144 - Rru_A0675 0.28 +0.3 798,237 + Rru_A0675 0.38 -0.2 798,340 + Rru_A0675 0.48 +0.5 798,341 - Rru_A0675 0.48 +0.2 798,370 - Rru_A0675 0.51 +0.2 798,532 + Rru_A0675 0.68 +0.3 798,540 + Rru_A0675 0.69 -0.3 798,543 + Rru_A0675 0.69 +0.9 798,835 + -1.2 798,977 - -0.2 799,018 - +0.4 800,275 - +1.4 800,275 - -0.0 800,275 - +1.3 800,275 - -3.4 800,364 + Rru_A0677 0.20 -0.8 800,404 + Rru_A0677 0.27 +0.7 800,404 + Rru_A0677 0.27 +0.2 800,404 + Rru_A0677 0.27 -0.0 800,405 - Rru_A0677 0.27 -3.6 800,427 + Rru_A0677 0.31 +0.3 800,428 - Rru_A0677 0.31 -0.0 800,572 + Rru_A0677 0.58 -2.1 800,572 + Rru_A0677 0.58 -1.3 800,573 - Rru_A0677 0.58 -0.5 800,573 - Rru_A0677 0.58 +1.8 800,573 - Rru_A0677 0.58 +0.8 800,949 + Rru_A0678 0.11 +0.1 800,950 - Rru_A0678 0.11 -1.2 801,028 + Rru_A0678 0.16 -2.4 801,029 - Rru_A0678 0.17 -1.0 801,029 - Rru_A0678 0.17 +0.3 801,029 - Rru_A0678 0.17 +0.7 801,029 - Rru_A0678 0.17 +1.8 801,029 - Rru_A0678 0.17 -0.2 801,029 - Rru_A0678 0.17 +0.5 801,029 - Rru_A0678 0.17 -0.5 801,029 - Rru_A0678 0.17 +1.1 801,029 - Rru_A0678 0.17 -3.0 801,030 + Rru_A0678 0.17 -1.9 801,030 + Rru_A0678 0.17 +0.4 801,030 + Rru_A0678 0.17 -1.0 801,065 - Rru_A0678 0.19 +1.2 801,077 + Rru_A0678 0.20 -0.0 801,077 + Rru_A0678 0.20 -1.5 801,078 - Rru_A0678 0.20 -1.5 801,087 + Rru_A0678 0.21 +1.6
Or see this region's nucleotide sequence