Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0668 and Rru_A0669 overlap by 4 nucleotides Rru_A0669 and Rru_A0670 are separated by 170 nucleotides Rru_A0670 and Rru_A0671 are separated by 3 nucleotides
Rru_A0668: Rru_A0668 - Cobalamin-5-phosphate synthase CobS (NCBI), at 791,573 to 792,358
_A0668
Rru_A0669: Rru_A0669 - Phosphoglycerate/bisphosphoglycerate mutase (NCBI), at 792,355 to 792,993
_A0669
Rru_A0670: Rru_A0670 - Cobalbumin biosynthesis enzyme (NCBI), at 793,164 to 793,736
_A0670
Rru_A0671: Rru_A0671 - cobalamin synthesis CobW protein (NCBI), at 793,740 to 794,792
_A0671
Position (kb) 793
794 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 792.233 kb on + strand, within Rru_A0668 at 792.233 kb on + strand, within Rru_A0668 at 792.234 kb on - strand, within Rru_A0668 at 792.234 kb on - strand, within Rru_A0668 at 792.234 kb on - strand, within Rru_A0668 at 792.986 kb on + strand at 792.986 kb on + strand at 792.986 kb on + strand at 792.986 kb on + strand at 792.986 kb on + strand at 792.987 kb on - strand at 792.987 kb on - strand at 792.987 kb on - strand at 792.991 kb on + strand at 792.991 kb on + strand at 792.991 kb on + strand at 792.991 kb on + strand at 793.296 kb on + strand, within Rru_A0670 at 793.296 kb on + strand, within Rru_A0670 at 793.297 kb on - strand, within Rru_A0670 at 793.481 kb on + strand, within Rru_A0670 at 793.685 kb on - strand at 794.048 kb on + strand, within Rru_A0671 at 794.048 kb on + strand, within Rru_A0671 at 794.048 kb on + strand, within Rru_A0671 at 794.048 kb on + strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.484 kb on - strand, within Rru_A0671 at 794.682 kb on + strand, within Rru_A0671 at 794.682 kb on + strand, within Rru_A0671 at 794.685 kb on + strand, within Rru_A0671 at 794.685 kb on + strand, within Rru_A0671 at 794.685 kb on + strand, within Rru_A0671 at 794.686 kb on - strand, within Rru_A0671 at 794.686 kb on - strand, within Rru_A0671 at 794.686 kb on - strand, within Rru_A0671
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 792,233 + Rru_A0668 0.84 -1.2 792,233 + Rru_A0668 0.84 -3.1 792,234 - Rru_A0668 0.84 -2.1 792,234 - Rru_A0668 0.84 -2.4 792,234 - Rru_A0668 0.84 -2.2 792,986 + -1.1 792,986 + -2.7 792,986 + -1.5 792,986 + -1.2 792,986 + +1.8 792,987 - -2.3 792,987 - -0.5 792,987 - -3.6 792,991 + -1.0 792,991 + -0.5 792,991 + -1.5 792,991 + -1.2 793,296 + Rru_A0670 0.23 -1.9 793,296 + Rru_A0670 0.23 +0.4 793,297 - Rru_A0670 0.23 -2.6 793,481 + Rru_A0670 0.55 -1.3 793,685 - -2.6 794,048 + Rru_A0671 0.29 -0.2 794,048 + Rru_A0671 0.29 -0.5 794,048 + Rru_A0671 0.29 +1.1 794,048 + Rru_A0671 0.29 -2.4 794,049 - Rru_A0671 0.29 -0.5 794,049 - Rru_A0671 0.29 -0.5 794,049 - Rru_A0671 0.29 -1.4 794,049 - Rru_A0671 0.29 -1.8 794,049 - Rru_A0671 0.29 -3.3 794,484 - Rru_A0671 0.71 -2.8 794,682 + Rru_A0671 0.89 -0.8 794,682 + Rru_A0671 0.89 -2.6 794,685 + Rru_A0671 0.90 +3.4 794,685 + Rru_A0671 0.90 -1.0 794,685 + Rru_A0671 0.90 +1.8 794,686 - Rru_A0671 0.90 -0.5 794,686 - Rru_A0671 0.90 +1.8 794,686 - Rru_A0671 0.90 -3.3
Or see this region's nucleotide sequence