Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0652 and Rru_A0653 overlap by 1 nucleotides Rru_A0653 and Rru_A0654 are separated by 47 nucleotides Rru_A0654 and Rru_A0655 are separated by 135 nucleotides Rru_A0655 and Rru_A0656 are separated by 33 nucleotides
Rru_A0652: Rru_A0652 - Pseudouridine synthase, Rsu (NCBI), at 772,842 to 773,723
_A0652
Rru_A0653: Rru_A0653 - hypothetical protein (NCBI), at 773,723 to 774,301
_A0653
Rru_A0654: Rru_A0654 - Multiple antibiotic resistance (MarC)-related proteins (NCBI), at 774,349 to 775,002
_A0654
Rru_A0655: Rru_A0655 - Transcriptional Regulator, AsnC family (NCBI), at 775,138 to 775,728
_A0655
Rru_A0656: Rru_A0656 - delta-1-pyrroline-5-carboxylate dehydrogenase 3 (NCBI), at 775,762 to 779,472
_A0656
Position (kb) 774
775
776 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 773.475 kb on + strand, within Rru_A0652 at 773.706 kb on - strand at 773.721 kb on + strand at 773.721 kb on + strand at 773.722 kb on - strand at 773.996 kb on - strand, within Rru_A0653 at 774.496 kb on - strand, within Rru_A0654 at 774.497 kb on + strand, within Rru_A0654 at 774.498 kb on - strand, within Rru_A0654 at 774.498 kb on - strand, within Rru_A0654 at 774.498 kb on - strand, within Rru_A0654 at 774.498 kb on - strand, within Rru_A0654 at 774.581 kb on + strand, within Rru_A0654 at 774.581 kb on + strand, within Rru_A0654 at 774.581 kb on + strand, within Rru_A0654 at 774.845 kb on + strand, within Rru_A0654 at 774.846 kb on - strand, within Rru_A0654 at 774.846 kb on - strand, within Rru_A0654 at 774.846 kb on - strand, within Rru_A0654 at 775.048 kb on + strand at 775.048 kb on + strand at 775.190 kb on + strand at 775.191 kb on - strand at 775.191 kb on - strand at 775.191 kb on - strand at 775.191 kb on - strand at 775.191 kb on - strand at 775.195 kb on - strand at 775.286 kb on + strand, within Rru_A0655 at 775.287 kb on - strand, within Rru_A0655 at 775.287 kb on - strand, within Rru_A0655 at 775.287 kb on - strand, within Rru_A0655 at 775.637 kb on + strand, within Rru_A0655 at 775.639 kb on + strand, within Rru_A0655
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 773,475 + Rru_A0652 0.72 +0.2 773,706 - -3.6 773,721 + -0.7 773,721 + +1.1 773,722 - -3.5 773,996 - Rru_A0653 0.47 -1.5 774,496 - Rru_A0654 0.22 -0.2 774,497 + Rru_A0654 0.23 -3.3 774,498 - Rru_A0654 0.23 -2.0 774,498 - Rru_A0654 0.23 -4.2 774,498 - Rru_A0654 0.23 -2.3 774,498 - Rru_A0654 0.23 -2.8 774,581 + Rru_A0654 0.35 -2.3 774,581 + Rru_A0654 0.35 -0.2 774,581 + Rru_A0654 0.35 -2.8 774,845 + Rru_A0654 0.76 -3.5 774,846 - Rru_A0654 0.76 -3.1 774,846 - Rru_A0654 0.76 -2.2 774,846 - Rru_A0654 0.76 -2.3 775,048 + -2.2 775,048 + -1.8 775,190 + -0.9 775,191 - +5.4 775,191 - +3.9 775,191 - +0.8 775,191 - +5.9 775,191 - +4.2 775,195 - +7.0 775,286 + Rru_A0655 0.25 +0.5 775,287 - Rru_A0655 0.25 +5.2 775,287 - Rru_A0655 0.25 +5.0 775,287 - Rru_A0655 0.25 +3.9 775,637 + Rru_A0655 0.84 +0.3 775,639 + Rru_A0655 0.85 +0.1
Or see this region's nucleotide sequence