Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0646

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0645 and Rru_A0646 are separated by 87 nucleotidesRru_A0646 and Rru_A0647 overlap by 4 nucleotides Rru_A0645: Rru_A0645 - Ribose-phosphate pyrophosphokinase (NCBI), at 766,783 to 767,715 _A0645 Rru_A0646: Rru_A0646 - Phosphoribosylamine--glycine ligase (NCBI), at 767,803 to 769,113 _A0646 Rru_A0647: Rru_A0647 - Pyridoxal-5'-phosphate-dependent enzyme, beta subunit (NCBI), at 769,110 to 770,102 _A0647 Position (kb) 767 768 769 770Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 767.509 kb on + strand, within Rru_A0645at 768.767 kb on + strand, within Rru_A0646at 768.767 kb on + strand, within Rru_A0646at 768.768 kb on - strand, within Rru_A0646at 769.567 kb on - strand, within Rru_A0647at 769.794 kb on - strand, within Rru_A0647at 769.794 kb on - strand, within Rru_A0647

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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767,509 + Rru_A0645 0.78 +0.2
768,767 + Rru_A0646 0.74 -0.8
768,767 + Rru_A0646 0.74 -2.1
768,768 - Rru_A0646 0.74 +0.8
769,567 - Rru_A0647 0.46 -1.2
769,794 - Rru_A0647 0.69 +4.6
769,794 - Rru_A0647 0.69 -0.5

Or see this region's nucleotide sequence