Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0640 and Rru_A0641 are separated by 115 nucleotides Rru_A0641 and Rru_A0642 overlap by 11 nucleotides Rru_A0642 and Rru_A0643 are separated by 27 nucleotides Rru_A0643 and Rru_A0644 are separated by 83 nucleotides
Rru_A0640: Rru_A0640 - ABC-2 transporter component (NCBI), at 761,873 to 762,685
_A0640
Rru_A0641: Rru_A0641 - Prolipoprotein diacylglyceryl transferase (NCBI), at 762,801 to 763,625
_A0641
Rru_A0642: Rru_A0642 - Protein of unknown function DUF185 (NCBI), at 763,615 to 764,709
_A0642
Rru_A0643: Rru_A0643 - Protein of unknown function DUF152 (NCBI), at 764,737 to 765,504
_A0643
Rru_A0644: Rru_A0644 - hypothetical protein (NCBI), at 765,588 to 766,616
_A0644
Position (kb) 763
764
765 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 762.668 kb on + strand at 762.668 kb on + strand at 764.727 kb on - strand at 764.790 kb on + strand at 764.821 kb on + strand, within Rru_A0643 at 764.821 kb on + strand, within Rru_A0643 at 764.821 kb on + strand, within Rru_A0643 at 764.821 kb on + strand, within Rru_A0643 at 764.821 kb on + strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 764.822 kb on - strand, within Rru_A0643 at 765.148 kb on - strand, within Rru_A0643 at 765.192 kb on + strand, within Rru_A0643 at 765.232 kb on + strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.233 kb on - strand, within Rru_A0643 at 765.344 kb on - strand, within Rru_A0643 at 765.344 kb on - strand, within Rru_A0643 at 765.433 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 762,668 + +3.4 762,668 + -1.0 764,727 - -0.5 764,790 + -0.5 764,821 + Rru_A0643 0.11 -2.6 764,821 + Rru_A0643 0.11 +1.3 764,821 + Rru_A0643 0.11 -0.5 764,821 + Rru_A0643 0.11 -0.2 764,821 + Rru_A0643 0.11 +0.3 764,822 - Rru_A0643 0.11 -0.2 764,822 - Rru_A0643 0.11 -2.2 764,822 - Rru_A0643 0.11 -2.2 764,822 - Rru_A0643 0.11 -2.2 764,822 - Rru_A0643 0.11 -1.0 765,148 - Rru_A0643 0.54 +0.8 765,192 + Rru_A0643 0.59 -2.2 765,232 + Rru_A0643 0.64 -2.6 765,233 - Rru_A0643 0.65 -0.7 765,233 - Rru_A0643 0.65 -3.8 765,233 - Rru_A0643 0.65 +1.8 765,233 - Rru_A0643 0.65 +1.8 765,233 - Rru_A0643 0.65 -2.0 765,344 - Rru_A0643 0.79 +0.0 765,344 - Rru_A0643 0.79 -0.2 765,433 + +0.3
Or see this region's nucleotide sequence