Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0640 and Rru_A0641 are separated by 115 nucleotides Rru_A0641 and Rru_A0642 overlap by 11 nucleotides
Rru_A0640: Rru_A0640 - ABC-2 transporter component (NCBI), at 761,873 to 762,685
_A0640
Rru_A0641: Rru_A0641 - Prolipoprotein diacylglyceryl transferase (NCBI), at 762,801 to 763,625
_A0641
Rru_A0642: Rru_A0642 - Protein of unknown function DUF185 (NCBI), at 763,615 to 764,709
_A0642
Position (kb) 762
763
764 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 761.855 kb on + strand at 761.855 kb on + strand at 761.856 kb on - strand at 761.954 kb on + strand at 761.954 kb on + strand at 761.954 kb on + strand at 761.954 kb on + strand at 761.954 kb on + strand at 761.954 kb on + strand at 761.987 kb on + strand, within Rru_A0640 at 761.988 kb on - strand, within Rru_A0640 at 761.988 kb on - strand, within Rru_A0640 at 762.148 kb on + strand, within Rru_A0640 at 762.228 kb on + strand, within Rru_A0640 at 762.228 kb on + strand, within Rru_A0640 at 762.229 kb on - strand, within Rru_A0640 at 762.229 kb on - strand, within Rru_A0640 at 762.325 kb on + strand, within Rru_A0640 at 762.325 kb on + strand, within Rru_A0640 at 762.325 kb on + strand, within Rru_A0640 at 762.326 kb on - strand, within Rru_A0640 at 762.326 kb on - strand, within Rru_A0640 at 762.326 kb on - strand, within Rru_A0640 at 762.338 kb on - strand, within Rru_A0640 at 762.344 kb on + strand, within Rru_A0640 at 762.344 kb on + strand, within Rru_A0640 at 762.345 kb on - strand, within Rru_A0640 at 762.345 kb on - strand, within Rru_A0640 at 762.345 kb on - strand, within Rru_A0640 at 762.345 kb on - strand, within Rru_A0640 at 762.345 kb on - strand, within Rru_A0640 at 762.410 kb on - strand, within Rru_A0640 at 762.421 kb on + strand, within Rru_A0640 at 762.421 kb on + strand, within Rru_A0640 at 762.421 kb on + strand, within Rru_A0640 at 762.421 kb on + strand, within Rru_A0640 at 762.422 kb on - strand, within Rru_A0640 at 762.422 kb on - strand, within Rru_A0640 at 762.479 kb on + strand, within Rru_A0640 at 762.479 kb on + strand, within Rru_A0640 at 762.479 kb on + strand, within Rru_A0640 at 762.479 kb on + strand, within Rru_A0640 at 762.479 kb on + strand, within Rru_A0640 at 762.479 kb on + strand, within Rru_A0640 at 762.479 kb on + strand, within Rru_A0640 at 762.479 kb on + strand, within Rru_A0640 at 762.480 kb on - strand, within Rru_A0640 at 762.480 kb on - strand, within Rru_A0640 at 762.480 kb on - strand, within Rru_A0640 at 762.480 kb on - strand, within Rru_A0640 at 762.480 kb on - strand, within Rru_A0640 at 762.480 kb on - strand, within Rru_A0640 at 762.480 kb on - strand, within Rru_A0640 at 762.480 kb on - strand, within Rru_A0640 at 762.480 kb on - strand, within Rru_A0640 at 762.480 kb on - strand, within Rru_A0640 at 762.480 kb on - strand, within Rru_A0640 at 762.480 kb on - strand, within Rru_A0640 at 762.480 kb on - strand, within Rru_A0640 at 762.480 kb on - strand, within Rru_A0640 at 762.482 kb on - strand, within Rru_A0640 at 762.482 kb on - strand, within Rru_A0640 at 762.482 kb on - strand, within Rru_A0640 at 762.539 kb on + strand, within Rru_A0640 at 762.539 kb on + strand, within Rru_A0640 at 762.539 kb on + strand, within Rru_A0640 at 762.539 kb on + strand, within Rru_A0640 at 762.540 kb on - strand, within Rru_A0640 at 762.540 kb on - strand, within Rru_A0640 at 762.540 kb on - strand, within Rru_A0640 at 762.540 kb on - strand, within Rru_A0640 at 762.668 kb on + strand at 762.668 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 761,855 + +2.1 761,855 + +1.1 761,856 - -1.8 761,954 + +0.9 761,954 + -3.4 761,954 + +1.3 761,954 + -0.6 761,954 + -2.4 761,954 + +0.3 761,987 + Rru_A0640 0.14 -0.7 761,988 - Rru_A0640 0.14 +0.4 761,988 - Rru_A0640 0.14 +0.9 762,148 + Rru_A0640 0.34 -1.0 762,228 + Rru_A0640 0.44 -1.0 762,228 + Rru_A0640 0.44 +0.1 762,229 - Rru_A0640 0.44 +0.2 762,229 - Rru_A0640 0.44 +0.5 762,325 + Rru_A0640 0.56 +0.3 762,325 + Rru_A0640 0.56 -2.5 762,325 + Rru_A0640 0.56 -1.9 762,326 - Rru_A0640 0.56 +1.7 762,326 - Rru_A0640 0.56 +0.4 762,326 - Rru_A0640 0.56 -0.2 762,338 - Rru_A0640 0.57 -0.5 762,344 + Rru_A0640 0.58 +0.7 762,344 + Rru_A0640 0.58 -1.5 762,345 - Rru_A0640 0.58 -0.2 762,345 - Rru_A0640 0.58 -1.5 762,345 - Rru_A0640 0.58 -1.2 762,345 - Rru_A0640 0.58 -1.5 762,345 - Rru_A0640 0.58 -0.3 762,410 - Rru_A0640 0.66 -1.7 762,421 + Rru_A0640 0.67 -1.3 762,421 + Rru_A0640 0.67 -1.9 762,421 + Rru_A0640 0.67 -0.6 762,421 + Rru_A0640 0.67 -0.5 762,422 - Rru_A0640 0.68 -2.2 762,422 - Rru_A0640 0.68 -3.4 762,479 + Rru_A0640 0.75 -1.3 762,479 + Rru_A0640 0.75 +0.0 762,479 + Rru_A0640 0.75 -1.7 762,479 + Rru_A0640 0.75 -2.6 762,479 + Rru_A0640 0.75 -2.2 762,479 + Rru_A0640 0.75 -1.3 762,479 + Rru_A0640 0.75 +0.2 762,479 + Rru_A0640 0.75 -2.5 762,480 - Rru_A0640 0.75 -0.7 762,480 - Rru_A0640 0.75 -0.7 762,480 - Rru_A0640 0.75 -1.2 762,480 - Rru_A0640 0.75 +0.3 762,480 - Rru_A0640 0.75 -0.5 762,480 - Rru_A0640 0.75 -0.2 762,480 - Rru_A0640 0.75 -1.6 762,480 - Rru_A0640 0.75 -2.2 762,480 - Rru_A0640 0.75 +1.4 762,480 - Rru_A0640 0.75 -1.0 762,480 - Rru_A0640 0.75 -2.9 762,480 - Rru_A0640 0.75 -3.1 762,480 - Rru_A0640 0.75 -2.6 762,480 - Rru_A0640 0.75 +3.8 762,482 - Rru_A0640 0.75 -2.5 762,482 - Rru_A0640 0.75 -3.6 762,482 - Rru_A0640 0.75 -2.2 762,539 + Rru_A0640 0.82 -0.2 762,539 + Rru_A0640 0.82 +0.5 762,539 + Rru_A0640 0.82 -2.0 762,539 + Rru_A0640 0.82 -0.6 762,540 - Rru_A0640 0.82 +0.6 762,540 - Rru_A0640 0.82 +1.8 762,540 - Rru_A0640 0.82 +0.8 762,540 - Rru_A0640 0.82 +0.4 762,668 + +3.4 762,668 + -1.0
Or see this region's nucleotide sequence