Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0635 and Rru_A0636 are separated by 3 nucleotides Rru_A0636 and Rru_A0637 are separated by 414 nucleotides Rru_A0637 and Rru_A0638 are separated by 221 nucleotides
Rru_A0635: Rru_A0635 - Na+/solute symporter (NCBI), at 756,135 to 757,814
_A0635
Rru_A0636: Rru_A0636 - Protein of unknown function DUF485 (NCBI), at 757,818 to 758,126
_A0636
Rru_A0637: Rru_A0637 - hypothetical protein (NCBI), at 758,541 to 758,927
_A0637
Rru_A0638: Rru_A0638 - hypothetical protein (NCBI), at 759,149 to 761,065
_A0638
Position (kb) 758
759 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 757.544 kb on - strand, within Rru_A0635 at 757.544 kb on - strand, within Rru_A0635 at 757.544 kb on - strand, within Rru_A0635 at 757.544 kb on - strand, within Rru_A0635 at 757.600 kb on + strand, within Rru_A0635 at 757.600 kb on + strand, within Rru_A0635 at 757.600 kb on + strand, within Rru_A0635 at 757.600 kb on + strand, within Rru_A0635 at 757.601 kb on - strand, within Rru_A0635 at 757.639 kb on + strand, within Rru_A0635 at 757.639 kb on + strand, within Rru_A0635 at 757.640 kb on - strand, within Rru_A0635 at 757.640 kb on - strand, within Rru_A0635 at 757.640 kb on - strand, within Rru_A0635 at 757.640 kb on - strand, within Rru_A0635 at 757.692 kb on + strand at 757.819 kb on + strand at 757.819 kb on + strand at 757.820 kb on - strand at 757.882 kb on + strand, within Rru_A0636 at 757.882 kb on + strand, within Rru_A0636 at 757.882 kb on + strand, within Rru_A0636 at 757.882 kb on + strand, within Rru_A0636 at 757.882 kb on + strand, within Rru_A0636 at 757.883 kb on - strand, within Rru_A0636 at 757.883 kb on - strand, within Rru_A0636 at 757.883 kb on - strand, within Rru_A0636 at 757.883 kb on - strand, within Rru_A0636 at 757.883 kb on - strand, within Rru_A0636 at 757.883 kb on - strand, within Rru_A0636 at 758.017 kb on + strand, within Rru_A0636 at 758.017 kb on + strand, within Rru_A0636 at 758.018 kb on - strand, within Rru_A0636 at 758.018 kb on - strand, within Rru_A0636 at 758.018 kb on - strand, within Rru_A0636 at 758.110 kb on + strand at 758.111 kb on - strand at 758.160 kb on + strand at 758.160 kb on + strand at 758.160 kb on + strand at 758.163 kb on + strand at 758.163 kb on + strand at 758.164 kb on - strand at 758.232 kb on + strand at 758.265 kb on - strand at 758.265 kb on - strand at 758.328 kb on + strand at 758.328 kb on + strand at 758.328 kb on + strand at 758.328 kb on + strand at 758.344 kb on - strand at 758.355 kb on + strand at 758.356 kb on - strand at 758.558 kb on - strand at 758.782 kb on + strand, within Rru_A0637 at 758.782 kb on + strand, within Rru_A0637 at 758.783 kb on - strand, within Rru_A0637 at 758.813 kb on - strand, within Rru_A0637 at 759.007 kb on + strand at 759.007 kb on + strand at 759.008 kb on - strand at 759.008 kb on - strand at 759.008 kb on - strand at 759.072 kb on - strand at 759.072 kb on - strand at 759.390 kb on + strand, within Rru_A0638 at 759.391 kb on - strand, within Rru_A0638 at 759.391 kb on - strand, within Rru_A0638 at 759.391 kb on - strand, within Rru_A0638 at 759.391 kb on - strand, within Rru_A0638 at 759.391 kb on - strand, within Rru_A0638 at 759.391 kb on - strand, within Rru_A0638 at 759.559 kb on + strand, within Rru_A0638
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 757,544 - Rru_A0635 0.84 -1.1 757,544 - Rru_A0635 0.84 -2.6 757,544 - Rru_A0635 0.84 +1.0 757,544 - Rru_A0635 0.84 -0.1 757,600 + Rru_A0635 0.87 +0.3 757,600 + Rru_A0635 0.87 +0.3 757,600 + Rru_A0635 0.87 +3.0 757,600 + Rru_A0635 0.87 -0.7 757,601 - Rru_A0635 0.87 +0.2 757,639 + Rru_A0635 0.90 +0.3 757,639 + Rru_A0635 0.90 +2.2 757,640 - Rru_A0635 0.90 -2.3 757,640 - Rru_A0635 0.90 -0.4 757,640 - Rru_A0635 0.90 +0.6 757,640 - Rru_A0635 0.90 +2.9 757,692 + -0.1 757,819 + +0.4 757,819 + +2.6 757,820 - -2.3 757,882 + Rru_A0636 0.21 -0.2 757,882 + Rru_A0636 0.21 +0.4 757,882 + Rru_A0636 0.21 -0.5 757,882 + Rru_A0636 0.21 +1.9 757,882 + Rru_A0636 0.21 -0.1 757,883 - Rru_A0636 0.21 -2.5 757,883 - Rru_A0636 0.21 +0.5 757,883 - Rru_A0636 0.21 -2.1 757,883 - Rru_A0636 0.21 -3.5 757,883 - Rru_A0636 0.21 -1.4 757,883 - Rru_A0636 0.21 -0.1 758,017 + Rru_A0636 0.64 -0.9 758,017 + Rru_A0636 0.64 +1.0 758,018 - Rru_A0636 0.65 -0.5 758,018 - Rru_A0636 0.65 -1.5 758,018 - Rru_A0636 0.65 +0.0 758,110 + -0.9 758,111 - -0.6 758,160 + -1.1 758,160 + -0.0 758,160 + -0.1 758,163 + +0.3 758,163 + +0.3 758,164 - -0.3 758,232 + -1.3 758,265 - +0.2 758,265 - -1.7 758,328 + -0.1 758,328 + -1.3 758,328 + -3.1 758,328 + -0.0 758,344 - +2.4 758,355 + -1.4 758,356 - +1.6 758,558 - -2.1 758,782 + Rru_A0637 0.62 -0.1 758,782 + Rru_A0637 0.62 -4.1 758,783 - Rru_A0637 0.63 -1.9 758,813 - Rru_A0637 0.70 -0.1 759,007 + -1.3 759,007 + -1.6 759,008 - -0.0 759,008 - +0.1 759,008 - -3.7 759,072 - -2.7 759,072 - -4.1 759,390 + Rru_A0638 0.13 -0.9 759,391 - Rru_A0638 0.13 -4.2 759,391 - Rru_A0638 0.13 -2.5 759,391 - Rru_A0638 0.13 +0.2 759,391 - Rru_A0638 0.13 +1.1 759,391 - Rru_A0638 0.13 +0.7 759,391 - Rru_A0638 0.13 -0.1 759,559 + Rru_A0638 0.21 -1.7
Or see this region's nucleotide sequence