Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0634

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0632 and Rru_A0633 are separated by 12 nucleotidesRru_A0633 and Rru_A0634 are separated by 11 nucleotidesRru_A0634 and Rru_A0635 are separated by 165 nucleotides Rru_A0632: Rru_A0632 - chemotaxis sensory transducer (NCBI), at 751,291 to 753,501 _A0632 Rru_A0633: Rru_A0633 - Exonuclease (NCBI), at 753,514 to 754,143 _A0633 Rru_A0634: Rru_A0634 - Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI), at 754,155 to 755,969 _A0634 Rru_A0635: Rru_A0635 - Na+/solute symporter (NCBI), at 756,135 to 757,814 _A0635 Position (kb) 754 755 756Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 753.156 kb on + strand, within Rru_A0632at 753.156 kb on + strand, within Rru_A0632at 753.166 kb on + strand, within Rru_A0632at 753.166 kb on + strand, within Rru_A0632at 753.166 kb on + strand, within Rru_A0632at 753.433 kb on + strandat 753.433 kb on + strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.554 kb on + strandat 753.554 kb on + strandat 753.554 kb on + strandat 753.555 kb on - strandat 753.555 kb on - strandat 753.661 kb on - strand, within Rru_A0633at 753.661 kb on - strand, within Rru_A0633at 753.663 kb on - strand, within Rru_A0633at 753.663 kb on - strand, within Rru_A0633at 753.663 kb on - strand, within Rru_A0633at 753.791 kb on + strand, within Rru_A0633at 753.792 kb on - strand, within Rru_A0633at 753.794 kb on + strand, within Rru_A0633at 753.795 kb on - strand, within Rru_A0633at 753.795 kb on - strand, within Rru_A0633at 754.051 kb on + strand, within Rru_A0633at 754.051 kb on + strand, within Rru_A0633at 754.051 kb on + strand, within Rru_A0633at 754.051 kb on + strand, within Rru_A0633at 754.088 kb on + strandat 754.088 kb on + strandat 754.088 kb on + strandat 754.089 kb on - strandat 754.089 kb on - strandat 754.089 kb on - strandat 754.156 kb on + strandat 754.235 kb on + strandat 754.741 kb on + strand, within Rru_A0634at 754.741 kb on + strand, within Rru_A0634at 754.742 kb on - strand, within Rru_A0634at 754.742 kb on - strand, within Rru_A0634at 754.742 kb on - strand, within Rru_A0634at 754.742 kb on - strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.188 kb on + strand, within Rru_A0634at 755.188 kb on + strand, within Rru_A0634at 755.188 kb on + strand, within Rru_A0634at 755.189 kb on - strand, within Rru_A0634at 755.189 kb on - strand, within Rru_A0634at 755.881 kb on + strandat 755.881 kb on + strandat 755.881 kb on + strandat 755.882 kb on - strandat 755.882 kb on - strandat 756.060 kb on - strandat 756.060 kb on - strandat 756.060 kb on - strandat 756.184 kb on + strandat 756.184 kb on + strandat 756.185 kb on - strandat 756.185 kb on - strandat 756.185 kb on - strandat 756.299 kb on - strandat 756.625 kb on + strand, within Rru_A0635at 756.865 kb on + strand, within Rru_A0635at 756.865 kb on + strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.871 kb on + strand, within Rru_A0635at 756.871 kb on + strand, within Rru_A0635at 756.872 kb on - strand, within Rru_A0635at 756.892 kb on + strand, within Rru_A0635at 756.893 kb on - strand, within Rru_A0635at 756.905 kb on + strand, within Rru_A0635at 756.906 kb on - strand, within Rru_A0635

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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753,156 + Rru_A0632 0.84 +0.7
753,156 + Rru_A0632 0.84 +0.0
753,166 + Rru_A0632 0.85 -0.2
753,166 + Rru_A0632 0.85 -3.5
753,166 + Rru_A0632 0.85 +0.3
753,433 + +0.3
753,433 + +2.4
753,434 - -2.5
753,434 - +1.1
753,434 - +0.9
753,434 - +0.5
753,434 - -1.3
753,434 - -0.3
753,434 - +1.9
753,434 - -1.0
753,434 - +1.2
753,554 + -1.9
753,554 + -3.2
753,554 + -2.1
753,555 - +0.6
753,555 - -1.3
753,661 - Rru_A0633 0.23 +0.9
753,661 - Rru_A0633 0.23 +1.5
753,663 - Rru_A0633 0.24 -1.0
753,663 - Rru_A0633 0.24 -0.1
753,663 - Rru_A0633 0.24 +0.4
753,791 + Rru_A0633 0.44 -1.7
753,792 - Rru_A0633 0.44 +0.2
753,794 + Rru_A0633 0.44 +1.2
753,795 - Rru_A0633 0.45 -2.2
753,795 - Rru_A0633 0.45 +1.3
754,051 + Rru_A0633 0.85 -0.4
754,051 + Rru_A0633 0.85 +4.0
754,051 + Rru_A0633 0.85 +0.6
754,051 + Rru_A0633 0.85 -1.3
754,088 + +0.3
754,088 + -0.7
754,088 + +1.4
754,089 - -1.5
754,089 - +1.7
754,089 - -1.7
754,156 + -0.1
754,235 + -2.4
754,741 + Rru_A0634 0.32 -3.1
754,741 + Rru_A0634 0.32 -1.9
754,742 - Rru_A0634 0.32 -3.5
754,742 - Rru_A0634 0.32 -0.9
754,742 - Rru_A0634 0.32 -0.1
754,742 - Rru_A0634 0.32 +1.3
755,186 + Rru_A0634 0.57 -0.1
755,186 + Rru_A0634 0.57 +0.6
755,186 + Rru_A0634 0.57 -0.3
755,186 + Rru_A0634 0.57 +0.5
755,186 + Rru_A0634 0.57 -1.5
755,186 + Rru_A0634 0.57 -2.5
755,186 + Rru_A0634 0.57 -1.7
755,186 + Rru_A0634 0.57 -0.5
755,186 + Rru_A0634 0.57 -3.1
755,186 + Rru_A0634 0.57 -2.2
755,187 - Rru_A0634 0.57 -3.2
755,187 - Rru_A0634 0.57 -0.7
755,187 - Rru_A0634 0.57 -2.1
755,187 - Rru_A0634 0.57 +0.3
755,187 - Rru_A0634 0.57 -2.3
755,187 - Rru_A0634 0.57 -0.7
755,187 - Rru_A0634 0.57 -1.7
755,187 - Rru_A0634 0.57 -1.8
755,188 + Rru_A0634 0.57 -2.1
755,188 + Rru_A0634 0.57 -0.2
755,188 + Rru_A0634 0.57 -0.1
755,189 - Rru_A0634 0.57 -2.7
755,189 - Rru_A0634 0.57 -2.6
755,881 + -0.9
755,881 + +1.3
755,881 + +3.9
755,882 - -1.5
755,882 - -3.0
756,060 - -0.3
756,060 - +2.9
756,060 - -0.8
756,184 + -0.7
756,184 + -3.3
756,185 - -0.7
756,185 - -1.2
756,185 - -1.1
756,299 - -1.8
756,625 + Rru_A0635 0.29 +1.0
756,865 + Rru_A0635 0.43 -0.1
756,865 + Rru_A0635 0.43 -1.2
756,866 - Rru_A0635 0.44 -0.9
756,866 - Rru_A0635 0.44 -2.4
756,866 - Rru_A0635 0.44 -1.6
756,866 - Rru_A0635 0.44 -4.5
756,871 + Rru_A0635 0.44 +1.0
756,871 + Rru_A0635 0.44 -1.8
756,872 - Rru_A0635 0.44 -1.8
756,892 + Rru_A0635 0.45 +0.6
756,893 - Rru_A0635 0.45 -4.1
756,905 + Rru_A0635 0.46 +0.4
756,906 - Rru_A0635 0.46 +0.6

Or see this region's nucleotide sequence