Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0630

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0629 and Rru_A0630 are separated by 22 nucleotidesRru_A0630 and Rru_A0631 are separated by 38 nucleotides Rru_A0629: Rru_A0629 - Geranylgeranyl reductase (NCBI), at 747,847 to 749,088 _A0629 Rru_A0630: Rru_A0630 - hypothetical protein (NCBI), at 749,111 to 749,464 _A0630 Rru_A0631: Rru_A0631 - Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain (NCBI), at 749,503 to 750,855 _A0631 Position (kb) 749 750Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 748.291 kb on - strand, within Rru_A0629at 748.307 kb on - strand, within Rru_A0629at 748.307 kb on - strand, within Rru_A0629at 748.463 kb on - strand, within Rru_A0629at 748.463 kb on - strand, within Rru_A0629at 748.516 kb on + strand, within Rru_A0629at 748.517 kb on - strand, within Rru_A0629at 748.547 kb on + strand, within Rru_A0629at 748.547 kb on + strand, within Rru_A0629at 748.547 kb on + strand, within Rru_A0629at 748.548 kb on - strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.766 kb on - strand, within Rru_A0629at 748.993 kb on + strandat 748.994 kb on - strandat 749.032 kb on + strandat 749.032 kb on + strandat 749.032 kb on + strandat 749.032 kb on + strandat 749.032 kb on + strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.552 kb on + strandat 749.552 kb on + strandat 749.552 kb on + strandat 749.552 kb on + strandat 749.553 kb on - strandat 749.610 kb on - strandat 749.849 kb on + strand, within Rru_A0631at 749.849 kb on + strand, within Rru_A0631at 749.849 kb on + strand, within Rru_A0631at 749.849 kb on + strand, within Rru_A0631at 749.849 kb on + strand, within Rru_A0631at 749.849 kb on + strand, within Rru_A0631at 749.850 kb on - strand, within Rru_A0631at 749.850 kb on - strand, within Rru_A0631at 749.850 kb on - strand, within Rru_A0631at 749.850 kb on - strand, within Rru_A0631at 750.152 kb on + strand, within Rru_A0631at 750.153 kb on - strand, within Rru_A0631at 750.244 kb on + strand, within Rru_A0631at 750.244 kb on + strand, within Rru_A0631at 750.244 kb on + strand, within Rru_A0631at 750.245 kb on - strand, within Rru_A0631at 750.245 kb on - strand, within Rru_A0631at 750.245 kb on - strand, within Rru_A0631at 750.245 kb on - strand, within Rru_A0631at 750.251 kb on + strand, within Rru_A0631at 750.252 kb on - strand, within Rru_A0631at 750.252 kb on - strand, within Rru_A0631at 750.252 kb on - strand, within Rru_A0631at 750.331 kb on - strand, within Rru_A0631

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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748,291 - Rru_A0629 0.36 -4.7
748,307 - Rru_A0629 0.37 -2.1
748,307 - Rru_A0629 0.37 -3.7
748,463 - Rru_A0629 0.50 -2.1
748,463 - Rru_A0629 0.50 +0.3
748,516 + Rru_A0629 0.54 -1.2
748,517 - Rru_A0629 0.54 +0.8
748,547 + Rru_A0629 0.56 -2.7
748,547 + Rru_A0629 0.56 -0.7
748,547 + Rru_A0629 0.56 -4.1
748,548 - Rru_A0629 0.56 -3.0
748,762 + Rru_A0629 0.74 -0.5
748,762 + Rru_A0629 0.74 -3.8
748,762 + Rru_A0629 0.74 -1.0
748,762 + Rru_A0629 0.74 -2.7
748,762 + Rru_A0629 0.74 -1.5
748,762 + Rru_A0629 0.74 -1.5
748,762 + Rru_A0629 0.74 -2.0
748,762 + Rru_A0629 0.74 -1.3
748,763 - Rru_A0629 0.74 -2.4
748,763 - Rru_A0629 0.74 -2.4
748,763 - Rru_A0629 0.74 -2.9
748,763 - Rru_A0629 0.74 -2.3
748,763 - Rru_A0629 0.74 -2.0
748,766 - Rru_A0629 0.74 +0.3
748,993 + -2.0
748,994 - -1.7
749,032 + -1.8
749,032 + -0.7
749,032 + -3.7
749,032 + -1.9
749,032 + -1.0
749,033 - -3.5
749,033 - -4.3
749,033 - -1.5
749,033 - -4.0
749,033 - -2.1
749,033 - -3.9
749,033 - -3.7
749,552 + +0.3
749,552 + -1.6
749,552 + +1.1
749,552 + -2.2
749,553 - +1.8
749,610 - -2.1
749,849 + Rru_A0631 0.26 +2.6
749,849 + Rru_A0631 0.26 -1.3
749,849 + Rru_A0631 0.26 -0.2
749,849 + Rru_A0631 0.26 -0.7
749,849 + Rru_A0631 0.26 -0.6
749,849 + Rru_A0631 0.26 +1.6
749,850 - Rru_A0631 0.26 -0.1
749,850 - Rru_A0631 0.26 +1.8
749,850 - Rru_A0631 0.26 +1.4
749,850 - Rru_A0631 0.26 -0.4
750,152 + Rru_A0631 0.48 +1.4
750,153 - Rru_A0631 0.48 +0.5
750,244 + Rru_A0631 0.55 -2.7
750,244 + Rru_A0631 0.55 -1.5
750,244 + Rru_A0631 0.55 -0.4
750,245 - Rru_A0631 0.55 -0.0
750,245 - Rru_A0631 0.55 -1.4
750,245 - Rru_A0631 0.55 -1.0
750,245 - Rru_A0631 0.55 -1.1
750,251 + Rru_A0631 0.55 -1.5
750,252 - Rru_A0631 0.55 +1.0
750,252 - Rru_A0631 0.55 -0.5
750,252 - Rru_A0631 0.55 +0.8
750,331 - Rru_A0631 0.61 +1.4

Or see this region's nucleotide sequence