Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0625 and Rru_A0626 are separated by 682 nucleotides Rru_A0626 and Rru_A0627 are separated by 83 nucleotides Rru_A0627 and Rru_A0628 overlap by 4 nucleotides
Rru_A0625: Rru_A0625 - hypothetical protein (NCBI), at 742,860 to 743,405
_A0625
Rru_A0626: Rru_A0626 - Transcriptional Regulator, Fis family (NCBI), at 744,088 to 745,506
_A0626
Rru_A0627: Rru_A0627 - Bacteriochlorophyll/chlorophyll synthetase (NCBI), at 745,590 to 746,501
_A0627
Rru_A0628: Rru_A0628 - PUCC protein (NCBI), at 746,498 to 747,847
_A0628
Position (kb) 744
745
746 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 743.196 kb on + strand, within Rru_A0625 at 743.197 kb on - strand, within Rru_A0625 at 743.315 kb on + strand, within Rru_A0625 at 743.393 kb on + strand at 743.393 kb on + strand at 743.393 kb on + strand at 743.503 kb on + strand at 743.503 kb on + strand at 743.504 kb on - strand at 743.504 kb on - strand at 743.729 kb on + strand at 743.730 kb on - strand at 743.730 kb on - strand at 743.732 kb on + strand at 743.733 kb on - strand at 743.733 kb on - strand at 743.754 kb on - strand at 743.771 kb on - strand at 743.855 kb on + strand at 743.970 kb on + strand at 744.068 kb on + strand at 745.551 kb on - strand at 745.553 kb on - strand at 745.579 kb on - strand at 745.614 kb on + strand at 745.638 kb on - strand at 745.638 kb on - strand at 745.860 kb on + strand, within Rru_A0627 at 745.861 kb on - strand, within Rru_A0627 at 745.861 kb on - strand, within Rru_A0627 at 745.861 kb on - strand, within Rru_A0627 at 745.861 kb on - strand, within Rru_A0627 at 745.862 kb on + strand, within Rru_A0627 at 745.863 kb on - strand, within Rru_A0627 at 745.863 kb on - strand, within Rru_A0627 at 745.963 kb on - strand, within Rru_A0627 at 745.965 kb on - strand, within Rru_A0627 at 746.112 kb on + strand, within Rru_A0627 at 746.113 kb on - strand, within Rru_A0627 at 746.114 kb on + strand, within Rru_A0627 at 746.114 kb on + strand, within Rru_A0627 at 746.114 kb on + strand, within Rru_A0627 at 746.115 kb on - strand, within Rru_A0627 at 746.115 kb on - strand, within Rru_A0627 at 746.145 kb on - strand, within Rru_A0627 at 746.145 kb on - strand, within Rru_A0627 at 746.299 kb on - strand, within Rru_A0627 at 746.299 kb on - strand, within Rru_A0627 at 746.388 kb on + strand, within Rru_A0627 at 746.388 kb on + strand, within Rru_A0627 at 746.388 kb on + strand, within Rru_A0627 at 746.388 kb on + strand, within Rru_A0627 at 746.389 kb on - strand, within Rru_A0627 at 746.389 kb on - strand, within Rru_A0627 at 746.389 kb on - strand, within Rru_A0627 at 746.390 kb on + strand, within Rru_A0627 at 746.391 kb on - strand, within Rru_A0627 at 746.391 kb on - strand, within Rru_A0627 at 746.391 kb on - strand, within Rru_A0627 at 746.391 kb on - strand, within Rru_A0627 at 746.412 kb on + strand at 746.412 kb on + strand at 746.412 kb on + strand at 746.412 kb on + strand at 746.412 kb on + strand at 746.412 kb on + strand at 746.412 kb on + strand at 746.413 kb on - strand at 746.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 743,196 + Rru_A0625 0.62 -0.2 743,197 - Rru_A0625 0.62 -2.2 743,315 + Rru_A0625 0.83 -2.5 743,393 + -2.4 743,393 + -1.2 743,393 + -1.1 743,503 + -1.0 743,503 + -3.2 743,504 - +1.8 743,504 - -1.1 743,729 + -3.2 743,730 - -1.3 743,730 - -1.6 743,732 + +0.3 743,733 - +0.6 743,733 - -2.4 743,754 - +2.4 743,771 - -0.0 743,855 + -1.0 743,970 + -1.2 744,068 + -2.3 745,551 - -3.1 745,553 - -2.2 745,579 - -2.2 745,614 + -3.9 745,638 - -3.0 745,638 - -3.5 745,860 + Rru_A0627 0.30 -2.2 745,861 - Rru_A0627 0.30 -3.9 745,861 - Rru_A0627 0.30 -1.3 745,861 - Rru_A0627 0.30 -3.2 745,861 - Rru_A0627 0.30 -3.2 745,862 + Rru_A0627 0.30 -3.2 745,863 - Rru_A0627 0.30 -1.7 745,863 - Rru_A0627 0.30 -1.0 745,963 - Rru_A0627 0.41 -2.1 745,965 - Rru_A0627 0.41 -2.6 746,112 + Rru_A0627 0.57 -3.2 746,113 - Rru_A0627 0.57 -2.0 746,114 + Rru_A0627 0.57 -2.2 746,114 + Rru_A0627 0.57 -1.7 746,114 + Rru_A0627 0.57 -2.0 746,115 - Rru_A0627 0.58 +1.8 746,115 - Rru_A0627 0.58 -1.7 746,145 - Rru_A0627 0.61 -3.2 746,145 - Rru_A0627 0.61 -0.2 746,299 - Rru_A0627 0.78 +1.8 746,299 - Rru_A0627 0.78 +1.8 746,388 + Rru_A0627 0.88 -2.3 746,388 + Rru_A0627 0.88 -3.6 746,388 + Rru_A0627 0.88 -2.1 746,388 + Rru_A0627 0.88 -1.6 746,389 - Rru_A0627 0.88 -3.1 746,389 - Rru_A0627 0.88 -2.7 746,389 - Rru_A0627 0.88 -3.6 746,390 + Rru_A0627 0.88 -3.0 746,391 - Rru_A0627 0.88 -1.3 746,391 - Rru_A0627 0.88 -1.3 746,391 - Rru_A0627 0.88 +1.8 746,391 - Rru_A0627 0.88 -3.1 746,412 + -0.5 746,412 + -3.4 746,412 + +0.3 746,412 + -4.1 746,412 + -4.3 746,412 + -3.9 746,412 + -0.2 746,413 - -1.0 746,413 - -2.2
Or see this region's nucleotide sequence