Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0623

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0622 and Rru_A0623 are separated by 4 nucleotidesRru_A0623 and Rru_A0624 overlap by 4 nucleotides Rru_A0622: Rru_A0622 - Light-independent protochlorophyllide reductase, B subunit (NCBI), at 738,809 to 740,449 _A0622 Rru_A0623: Rru_A0623 - Light-independent protochlorophyllide reductase, N subunit (NCBI), at 740,454 to 741,776 _A0623 Rru_A0624: Rru_A0624 - 2-vinyl bacteriochlorophyllide hydratase (NCBI), at 741,773 to 742,354 _A0624 Position (kb) 740 741 742Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 739.462 kb on - strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.581 kb on + strand, within Rru_A0622at 739.949 kb on - strand, within Rru_A0622at 739.949 kb on - strand, within Rru_A0622at 739.949 kb on - strand, within Rru_A0622at 739.949 kb on - strand, within Rru_A0622at 739.949 kb on - strand, within Rru_A0622at 739.949 kb on - strand, within Rru_A0622at 740.037 kb on + strand, within Rru_A0622at 740.077 kb on - strand, within Rru_A0622at 740.337 kb on + strandat 740.337 kb on + strandat 740.337 kb on + strandat 740.337 kb on + strandat 740.338 kb on - strandat 740.367 kb on + strandat 740.367 kb on + strandat 740.367 kb on + strandat 740.367 kb on + strandat 740.368 kb on - strandat 740.368 kb on - strandat 740.368 kb on - strandat 740.368 kb on - strandat 740.427 kb on + strandat 740.427 kb on + strandat 740.427 kb on + strandat 740.427 kb on + strandat 740.427 kb on + strandat 740.428 kb on - strandat 740.428 kb on - strandat 740.428 kb on - strandat 740.428 kb on - strandat 740.428 kb on - strandat 740.428 kb on - strandat 740.456 kb on - strandat 740.456 kb on - strandat 740.525 kb on - strandat 741.308 kb on - strand, within Rru_A0623at 741.855 kb on + strand, within Rru_A0624at 741.855 kb on + strand, within Rru_A0624at 741.856 kb on - strand, within Rru_A0624at 741.856 kb on - strand, within Rru_A0624at 741.864 kb on + strand, within Rru_A0624at 741.864 kb on + strand, within Rru_A0624at 741.864 kb on + strand, within Rru_A0624at 741.930 kb on + strand, within Rru_A0624at 741.931 kb on - strand, within Rru_A0624at 741.931 kb on - strand, within Rru_A0624at 742.048 kb on + strand, within Rru_A0624at 742.048 kb on + strand, within Rru_A0624at 742.049 kb on - strand, within Rru_A0624at 742.049 kb on - strand, within Rru_A0624at 742.049 kb on - strand, within Rru_A0624at 742.049 kb on - strand, within Rru_A0624at 742.050 kb on + strand, within Rru_A0624at 742.050 kb on + strand, within Rru_A0624at 742.051 kb on - strand, within Rru_A0624at 742.051 kb on - strand, within Rru_A0624at 742.116 kb on + strand, within Rru_A0624at 742.131 kb on + strand, within Rru_A0624at 742.132 kb on - strand, within Rru_A0624at 742.230 kb on + strand, within Rru_A0624at 742.230 kb on + strand, within Rru_A0624at 742.230 kb on + strand, within Rru_A0624at 742.230 kb on + strand, within Rru_A0624at 742.231 kb on - strand, within Rru_A0624at 742.231 kb on - strand, within Rru_A0624at 742.402 kb on + strandat 742.402 kb on + strandat 742.402 kb on + strandat 742.526 kb on + strandat 742.564 kb on + strandat 742.667 kb on - strandat 742.689 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
739,462 - Rru_A0622 0.40 -2.9
739,473 + Rru_A0622 0.40 -3.1
739,473 + Rru_A0622 0.40 -1.0
739,473 + Rru_A0622 0.40 +1.8
739,473 + Rru_A0622 0.40 -2.9
739,473 + Rru_A0622 0.40 -1.5
739,473 + Rru_A0622 0.40 -2.0
739,473 + Rru_A0622 0.40 -1.7
739,473 + Rru_A0622 0.40 -3.8
739,474 - Rru_A0622 0.41 -1.5
739,474 - Rru_A0622 0.41 -4.3
739,474 - Rru_A0622 0.41 -0.5
739,474 - Rru_A0622 0.41 -0.5
739,474 - Rru_A0622 0.41 -2.8
739,581 + Rru_A0622 0.47 -1.6
739,949 - Rru_A0622 0.69 -1.3
739,949 - Rru_A0622 0.69 -3.2
739,949 - Rru_A0622 0.69 -4.4
739,949 - Rru_A0622 0.69 -1.9
739,949 - Rru_A0622 0.69 -2.4
739,949 - Rru_A0622 0.69 -3.4
740,037 + Rru_A0622 0.75 -1.3
740,077 - Rru_A0622 0.77 -1.8
740,337 + -3.8
740,337 + -3.9
740,337 + -3.3
740,337 + -3.2
740,338 - -0.5
740,367 + -3.0
740,367 + -2.2
740,367 + +1.8
740,367 + -3.9
740,368 - -2.6
740,368 - +1.8
740,368 - -2.2
740,368 - -1.9
740,427 + +0.8
740,427 + -0.4
740,427 + -3.7
740,427 + -2.2
740,427 + -2.9
740,428 - -0.4
740,428 - -3.2
740,428 - -1.5
740,428 - -1.4
740,428 - -2.4
740,428 - -2.2
740,456 - -2.9
740,456 - -0.2
740,525 - -4.3
741,308 - Rru_A0623 0.65 -3.3
741,855 + Rru_A0624 0.14 -2.2
741,855 + Rru_A0624 0.14 -2.1
741,856 - Rru_A0624 0.14 -2.7
741,856 - Rru_A0624 0.14 +1.3
741,864 + Rru_A0624 0.16 +1.8
741,864 + Rru_A0624 0.16 -2.0
741,864 + Rru_A0624 0.16 -1.6
741,930 + Rru_A0624 0.27 -3.9
741,931 - Rru_A0624 0.27 -3.6
741,931 - Rru_A0624 0.27 -3.6
742,048 + Rru_A0624 0.47 -5.5
742,048 + Rru_A0624 0.47 -1.2
742,049 - Rru_A0624 0.47 -1.6
742,049 - Rru_A0624 0.47 +1.3
742,049 - Rru_A0624 0.47 -5.0
742,049 - Rru_A0624 0.47 +1.8
742,050 + Rru_A0624 0.48 +0.8
742,050 + Rru_A0624 0.48 -1.5
742,051 - Rru_A0624 0.48 -3.3
742,051 - Rru_A0624 0.48 -5.1
742,116 + Rru_A0624 0.59 -1.1
742,131 + Rru_A0624 0.62 -3.6
742,132 - Rru_A0624 0.62 -2.1
742,230 + Rru_A0624 0.79 +0.8
742,230 + Rru_A0624 0.79 -2.5
742,230 + Rru_A0624 0.79 -4.9
742,230 + Rru_A0624 0.79 -1.9
742,231 - Rru_A0624 0.79 -0.6
742,231 - Rru_A0624 0.79 -3.2
742,402 + -3.2
742,402 + -2.2
742,402 + -2.6
742,526 + -0.6
742,564 + +0.3
742,667 - -0.7
742,689 + -3.4

Or see this region's nucleotide sequence