Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0612

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0612 and Rru_A0613 are separated by 335 nucleotides Rru_A0612: Rru_A0612 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI), at 724,727 to 727,912 _A0612 Rru_A0613: Rru_A0613 - Bacteriochlorophyll 4-vinyl reductase (NCBI), at 728,248 to 728,883 _A0613 Position (kb) 724 725 726 727 728Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 724.057 kb on - strandat 724.057 kb on - strandat 724.057 kb on - strandat 724.057 kb on - strandat 724.057 kb on - strandat 724.057 kb on - strandat 724.068 kb on - strandat 724.135 kb on - strandat 724.135 kb on - strandat 724.135 kb on - strandat 724.337 kb on + strandat 724.540 kb on + strandat 724.551 kb on + strandat 724.604 kb on + strandat 724.763 kb on + strandat 724.946 kb on - strandat 725.001 kb on + strandat 725.001 kb on + strandat 725.001 kb on + strandat 725.002 kb on - strandat 725.016 kb on + strandat 725.245 kb on - strand, within Rru_A0612at 725.574 kb on + strand, within Rru_A0612at 725.574 kb on + strand, within Rru_A0612at 725.575 kb on - strand, within Rru_A0612at 725.575 kb on - strand, within Rru_A0612at 725.575 kb on - strand, within Rru_A0612at 725.659 kb on + strand, within Rru_A0612at 725.660 kb on - strand, within Rru_A0612at 725.661 kb on + strand, within Rru_A0612at 725.661 kb on + strand, within Rru_A0612at 725.661 kb on + strand, within Rru_A0612at 725.662 kb on - strand, within Rru_A0612at 725.662 kb on - strand, within Rru_A0612at 725.662 kb on - strand, within Rru_A0612at 725.662 kb on - strand, within Rru_A0612at 725.662 kb on - strand, within Rru_A0612at 725.843 kb on - strand, within Rru_A0612at 725.843 kb on - strand, within Rru_A0612at 725.851 kb on + strand, within Rru_A0612at 725.962 kb on + strand, within Rru_A0612at 725.962 kb on + strand, within Rru_A0612at 725.973 kb on + strand, within Rru_A0612at 725.974 kb on - strand, within Rru_A0612at 726.130 kb on - strand, within Rru_A0612at 726.130 kb on - strand, within Rru_A0612at 726.130 kb on - strand, within Rru_A0612at 726.130 kb on - strand, within Rru_A0612at 726.130 kb on - strand, within Rru_A0612at 726.138 kb on + strand, within Rru_A0612at 726.139 kb on - strand, within Rru_A0612at 726.163 kb on + strand, within Rru_A0612at 726.164 kb on - strand, within Rru_A0612at 726.219 kb on + strand, within Rru_A0612at 726.219 kb on + strand, within Rru_A0612at 726.219 kb on + strand, within Rru_A0612at 726.219 kb on + strand, within Rru_A0612at 726.220 kb on - strand, within Rru_A0612at 726.220 kb on - strand, within Rru_A0612at 726.321 kb on + strand, within Rru_A0612at 726.321 kb on + strand, within Rru_A0612at 726.321 kb on + strand, within Rru_A0612at 726.321 kb on + strand, within Rru_A0612at 726.322 kb on - strand, within Rru_A0612at 726.728 kb on + strand, within Rru_A0612at 726.776 kb on - strand, within Rru_A0612at 726.776 kb on - strand, within Rru_A0612at 726.822 kb on + strand, within Rru_A0612at 726.883 kb on + strand, within Rru_A0612at 726.883 kb on + strand, within Rru_A0612at 726.883 kb on + strand, within Rru_A0612at 726.885 kb on + strand, within Rru_A0612at 726.885 kb on + strand, within Rru_A0612at 726.885 kb on + strand, within Rru_A0612at 726.885 kb on + strand, within Rru_A0612at 726.886 kb on - strand, within Rru_A0612at 726.922 kb on + strand, within Rru_A0612at 726.922 kb on + strand, within Rru_A0612at 726.923 kb on - strand, within Rru_A0612at 726.923 kb on - strand, within Rru_A0612at 726.923 kb on - strand, within Rru_A0612at 727.077 kb on + strand, within Rru_A0612at 727.099 kb on - strand, within Rru_A0612at 727.796 kb on - strandat 727.796 kb on - strandat 727.796 kb on - strandat 727.879 kb on + strandat 728.100 kb on - strandat 728.144 kb on + strandat 728.384 kb on + strand, within Rru_A0613at 728.387 kb on + strand, within Rru_A0613at 728.387 kb on + strand, within Rru_A0613at 728.387 kb on + strand, within Rru_A0613at 728.606 kb on + strand, within Rru_A0613at 728.738 kb on + strand, within Rru_A0613at 728.739 kb on - strand, within Rru_A0613

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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724,057 - -2.6
724,057 - -4.3
724,057 - -2.4
724,057 - -2.8
724,057 - -0.1
724,057 - -0.1
724,068 - -3.8
724,135 - -1.6
724,135 - -2.6
724,135 - +0.3
724,337 + -1.8
724,540 + +0.3
724,551 + +0.9
724,604 + -2.1
724,763 + -2.5
724,946 - +3.2
725,001 + +2.4
725,001 + +0.7
725,001 + +0.3
725,002 - +0.7
725,016 + -2.2
725,245 - Rru_A0612 0.16 -0.4
725,574 + Rru_A0612 0.27 +1.4
725,574 + Rru_A0612 0.27 -1.3
725,575 - Rru_A0612 0.27 +2.5
725,575 - Rru_A0612 0.27 -2.4
725,575 - Rru_A0612 0.27 -1.1
725,659 + Rru_A0612 0.29 -2.6
725,660 - Rru_A0612 0.29 -0.4
725,661 + Rru_A0612 0.29 +1.1
725,661 + Rru_A0612 0.29 +1.5
725,661 + Rru_A0612 0.29 -0.4
725,662 - Rru_A0612 0.29 +0.1
725,662 - Rru_A0612 0.29 +0.8
725,662 - Rru_A0612 0.29 -1.2
725,662 - Rru_A0612 0.29 -1.6
725,662 - Rru_A0612 0.29 +0.9
725,843 - Rru_A0612 0.35 -0.4
725,843 - Rru_A0612 0.35 -1.4
725,851 + Rru_A0612 0.35 +0.9
725,962 + Rru_A0612 0.39 +3.0
725,962 + Rru_A0612 0.39 -0.8
725,973 + Rru_A0612 0.39 +1.5
725,974 - Rru_A0612 0.39 +1.3
726,130 - Rru_A0612 0.44 +0.1
726,130 - Rru_A0612 0.44 +0.8
726,130 - Rru_A0612 0.44 -0.9
726,130 - Rru_A0612 0.44 -0.9
726,130 - Rru_A0612 0.44 +0.2
726,138 + Rru_A0612 0.44 +1.9
726,139 - Rru_A0612 0.44 +1.0
726,163 + Rru_A0612 0.45 +1.4
726,164 - Rru_A0612 0.45 -0.4
726,219 + Rru_A0612 0.47 +1.0
726,219 + Rru_A0612 0.47 +2.6
726,219 + Rru_A0612 0.47 +1.5
726,219 + Rru_A0612 0.47 +1.8
726,220 - Rru_A0612 0.47 +0.1
726,220 - Rru_A0612 0.47 +0.4
726,321 + Rru_A0612 0.50 -1.7
726,321 + Rru_A0612 0.50 -2.1
726,321 + Rru_A0612 0.50 -0.6
726,321 + Rru_A0612 0.50 -1.1
726,322 - Rru_A0612 0.50 -2.9
726,728 + Rru_A0612 0.63 +0.9
726,776 - Rru_A0612 0.64 -0.4
726,776 - Rru_A0612 0.64 -0.1
726,822 + Rru_A0612 0.66 -2.3
726,883 + Rru_A0612 0.68 +1.1
726,883 + Rru_A0612 0.68 -3.0
726,883 + Rru_A0612 0.68 +1.5
726,885 + Rru_A0612 0.68 +1.4
726,885 + Rru_A0612 0.68 -1.4
726,885 + Rru_A0612 0.68 -1.1
726,885 + Rru_A0612 0.68 +0.5
726,886 - Rru_A0612 0.68 -0.3
726,922 + Rru_A0612 0.69 +2.5
726,922 + Rru_A0612 0.69 +0.9
726,923 - Rru_A0612 0.69 +0.9
726,923 - Rru_A0612 0.69 -2.6
726,923 - Rru_A0612 0.69 +0.9
727,077 + Rru_A0612 0.74 +1.6
727,099 - Rru_A0612 0.74 +1.2
727,796 - -2.6
727,796 - +0.4
727,796 - +0.5
727,879 + -2.1
728,100 - -2.6
728,144 + -0.8
728,384 + Rru_A0613 0.21 -2.7
728,387 + Rru_A0613 0.22 -1.6
728,387 + Rru_A0613 0.22 -2.6
728,387 + Rru_A0613 0.22 -2.8
728,606 + Rru_A0613 0.56 +1.5
728,738 + Rru_A0613 0.77 +0.9
728,739 - Rru_A0613 0.77 -0.3

Or see this region's nucleotide sequence