Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0605 and Rru_A0606 overlap by 1 nucleotides Rru_A0606 and Rru_A0607 are separated by 38 nucleotides Rru_A0607 and Rru_A0608 are separated by 218 nucleotides
Rru_A0605: Rru_A0605 - hypothetical protein (NCBI), at 717,390 to 718,445
_A0605
Rru_A0606: Rru_A0606 - Transcriptional Regulator, LysR family (NCBI), at 718,445 to 719,353
_A0606
Rru_A0607: Rru_A0607 - Adenine phosphoribosyl transferase (NCBI), at 719,392 to 719,907
_A0607
Rru_A0608: Rru_A0608 - TRAP transporter solute receptor, TAXI family (NCBI), at 720,126 to 721,106
_A0608
Position (kb) 718
719
720 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 717.585 kb on - strand, within Rru_A0605 at 717.860 kb on + strand, within Rru_A0605 at 717.894 kb on + strand, within Rru_A0605 at 717.894 kb on + strand, within Rru_A0605 at 717.895 kb on - strand, within Rru_A0605 at 717.895 kb on - strand, within Rru_A0605 at 717.984 kb on + strand, within Rru_A0605 at 717.985 kb on - strand, within Rru_A0605 at 718.233 kb on - strand, within Rru_A0605 at 718.474 kb on + strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.821 kb on - strand, within Rru_A0606 at 719.633 kb on + strand, within Rru_A0607 at 719.634 kb on - strand, within Rru_A0607 at 719.634 kb on - strand, within Rru_A0607 at 719.847 kb on - strand, within Rru_A0607 at 719.890 kb on - strand at 719.947 kb on + strand at 719.947 kb on + strand at 720.255 kb on + strand, within Rru_A0608 at 720.255 kb on + strand, within Rru_A0608 at 720.255 kb on + strand, within Rru_A0608 at 720.255 kb on + strand, within Rru_A0608
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 717,585 - Rru_A0605 0.18 +1.0 717,860 + Rru_A0605 0.45 -0.4 717,894 + Rru_A0605 0.48 -0.4 717,894 + Rru_A0605 0.48 -0.1 717,895 - Rru_A0605 0.48 +1.7 717,895 - Rru_A0605 0.48 -2.4 717,984 + Rru_A0605 0.56 +1.0 717,985 - Rru_A0605 0.56 +1.3 718,233 - Rru_A0605 0.80 +1.6 718,474 + +0.9 718,475 - +1.9 718,475 - -2.8 718,475 - +0.3 718,475 - +1.9 718,821 - Rru_A0606 0.41 +2.7 719,633 + Rru_A0607 0.47 -0.6 719,634 - Rru_A0607 0.47 -1.9 719,634 - Rru_A0607 0.47 -1.4 719,847 - Rru_A0607 0.88 -1.8 719,890 - -1.5 719,947 + +1.0 719,947 + -0.7 720,255 + Rru_A0608 0.13 -2.9 720,255 + Rru_A0608 0.13 -2.5 720,255 + Rru_A0608 0.13 -0.3 720,255 + Rru_A0608 0.13 -2.5
Or see this region's nucleotide sequence