Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0600 and Rru_A0601 are separated by 77 nucleotides Rru_A0601 and Rru_A0602 are separated by 65 nucleotides Rru_A0602 and Rru_A0603 overlap by 4 nucleotides Rru_A0603 and Rru_A0604 are separated by 13 nucleotides
Rru_A0600: Rru_A0600 - Phosphate transport system permease protein 2 (NCBI), at 713,486 to 714,766
_A0600
Rru_A0601: Rru_A0601 - Phosphate transport system permease protein 1 (NCBI), at 714,844 to 715,590
_A0601
Rru_A0602: Rru_A0602 - Phosphate uptake regulator, PhoU (NCBI), at 715,656 to 716,387
_A0602
Rru_A0603: Rru_A0603 - Two component Transcriptional regulator, Winged helix family (NCBI), at 716,384 to 717,085
_A0603
Rru_A0604: Rru_A0604 - hypothetical protein (NCBI), at 717,099 to 717,278
_A0604
Position (kb) 715
716
717 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 715.052 kb on - strand, within Rru_A0601 at 715.424 kb on - strand, within Rru_A0601 at 715.651 kb on + strand at 715.651 kb on + strand at 715.651 kb on + strand at 715.651 kb on + strand at 715.651 kb on + strand at 715.652 kb on - strand at 715.956 kb on + strand, within Rru_A0602 at 715.957 kb on - strand, within Rru_A0602 at 716.066 kb on + strand, within Rru_A0602 at 716.067 kb on - strand, within Rru_A0602 at 716.079 kb on + strand, within Rru_A0602 at 716.079 kb on + strand, within Rru_A0602 at 716.079 kb on + strand, within Rru_A0602 at 716.080 kb on - strand, within Rru_A0602 at 716.145 kb on + strand, within Rru_A0602 at 716.146 kb on - strand, within Rru_A0602 at 716.146 kb on - strand, within Rru_A0602 at 716.146 kb on - strand, within Rru_A0602 at 716.146 kb on - strand, within Rru_A0602 at 716.176 kb on - strand, within Rru_A0602 at 716.176 kb on - strand, within Rru_A0602 at 716.176 kb on - strand, within Rru_A0602 at 716.176 kb on - strand, within Rru_A0602 at 716.210 kb on + strand, within Rru_A0602 at 716.211 kb on - strand, within Rru_A0602 at 716.286 kb on + strand, within Rru_A0602 at 716.286 kb on + strand, within Rru_A0602 at 716.286 kb on + strand, within Rru_A0602 at 716.286 kb on + strand, within Rru_A0602 at 716.286 kb on + strand, within Rru_A0602 at 716.286 kb on + strand, within Rru_A0602 at 716.286 kb on + strand, within Rru_A0602 at 716.286 kb on + strand, within Rru_A0602 at 716.287 kb on - strand, within Rru_A0602 at 716.287 kb on - strand, within Rru_A0602 at 716.442 kb on - strand at 716.443 kb on + strand at 716.687 kb on + strand, within Rru_A0603 at 716.688 kb on - strand, within Rru_A0603 at 716.690 kb on - strand, within Rru_A0603 at 716.690 kb on - strand, within Rru_A0603 at 716.783 kb on + strand, within Rru_A0603 at 716.784 kb on - strand, within Rru_A0603 at 716.837 kb on + strand, within Rru_A0603 at 716.838 kb on - strand, within Rru_A0603 at 716.838 kb on - strand, within Rru_A0603 at 716.838 kb on - strand, within Rru_A0603 at 716.948 kb on + strand, within Rru_A0603 at 717.083 kb on + strand at 717.083 kb on + strand at 717.083 kb on + strand at 717.084 kb on - strand at 717.084 kb on - strand at 717.283 kb on - strand at 717.296 kb on + strand at 717.317 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 715,052 - Rru_A0601 0.28 +1.9 715,424 - Rru_A0601 0.78 -0.4 715,651 + -1.1 715,651 + -0.6 715,651 + -2.4 715,651 + +1.6 715,651 + +0.5 715,652 - -1.4 715,956 + Rru_A0602 0.41 +3.2 715,957 - Rru_A0602 0.41 +1.4 716,066 + Rru_A0602 0.56 +1.6 716,067 - Rru_A0602 0.56 -0.8 716,079 + Rru_A0602 0.58 +2.3 716,079 + Rru_A0602 0.58 +0.3 716,079 + Rru_A0602 0.58 +1.9 716,080 - Rru_A0602 0.58 -0.6 716,145 + Rru_A0602 0.67 +0.4 716,146 - Rru_A0602 0.67 +0.5 716,146 - Rru_A0602 0.67 -0.2 716,146 - Rru_A0602 0.67 +1.3 716,146 - Rru_A0602 0.67 +0.4 716,176 - Rru_A0602 0.71 +0.7 716,176 - Rru_A0602 0.71 -1.4 716,176 - Rru_A0602 0.71 +2.2 716,176 - Rru_A0602 0.71 -1.4 716,210 + Rru_A0602 0.76 +3.2 716,211 - Rru_A0602 0.76 -0.1 716,286 + Rru_A0602 0.86 +3.2 716,286 + Rru_A0602 0.86 -1.9 716,286 + Rru_A0602 0.86 +1.7 716,286 + Rru_A0602 0.86 +3.2 716,286 + Rru_A0602 0.86 +2.3 716,286 + Rru_A0602 0.86 +0.4 716,286 + Rru_A0602 0.86 +2.3 716,286 + Rru_A0602 0.86 +3.4 716,287 - Rru_A0602 0.86 +1.0 716,287 - Rru_A0602 0.86 -2.9 716,442 - +1.9 716,443 + +0.8 716,687 + Rru_A0603 0.43 -0.5 716,688 - Rru_A0603 0.43 -0.4 716,690 - Rru_A0603 0.44 -3.8 716,690 - Rru_A0603 0.44 +1.9 716,783 + Rru_A0603 0.57 +0.4 716,784 - Rru_A0603 0.57 +0.9 716,837 + Rru_A0603 0.65 -1.4 716,838 - Rru_A0603 0.65 +1.9 716,838 - Rru_A0603 0.65 +1.9 716,838 - Rru_A0603 0.65 +0.4 716,948 + Rru_A0603 0.80 -0.0 717,083 + +1.2 717,083 + -1.8 717,083 + -0.3 717,084 - -0.2 717,084 - -0.3 717,283 - -0.1 717,296 + -2.6 717,317 - +0.4
Or see this region's nucleotide sequence