Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0599 and Rru_A0600 are separated by 71 nucleotides Rru_A0600 and Rru_A0601 are separated by 77 nucleotides Rru_A0601 and Rru_A0602 are separated by 65 nucleotides
Rru_A0599: Rru_A0599 - Phosphate ABC transporter, permease protein PstC (NCBI), at 712,017 to 713,414
_A0599
Rru_A0600: Rru_A0600 - Phosphate transport system permease protein 2 (NCBI), at 713,486 to 714,766
_A0600
Rru_A0601: Rru_A0601 - Phosphate transport system permease protein 1 (NCBI), at 714,844 to 715,590
_A0601
Rru_A0602: Rru_A0602 - Phosphate uptake regulator, PhoU (NCBI), at 715,656 to 716,387
_A0602
Position (kb) 713
714
715 Strain fitness (log2 ratio) -2
-1
0
1
2 at 712.798 kb on - strand, within Rru_A0599 at 712.798 kb on - strand, within Rru_A0599 at 712.800 kb on - strand, within Rru_A0599 at 713.407 kb on - strand at 714.123 kb on - strand, within Rru_A0600 at 715.052 kb on - strand, within Rru_A0601 at 715.424 kb on - strand, within Rru_A0601 at 715.651 kb on + strand at 715.651 kb on + strand at 715.651 kb on + strand at 715.651 kb on + strand at 715.651 kb on + strand at 715.652 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 712,798 - Rru_A0599 0.56 +0.2 712,798 - Rru_A0599 0.56 +1.9 712,800 - Rru_A0599 0.56 +0.4 713,407 - +0.9 714,123 - Rru_A0600 0.50 -1.1 715,052 - Rru_A0601 0.28 +1.9 715,424 - Rru_A0601 0.78 -0.4 715,651 + -1.1 715,651 + -0.6 715,651 + -2.4 715,651 + +1.6 715,651 + +0.5 715,652 - -1.4
Or see this region's nucleotide sequence