Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0597 and Rru_A0598 are separated by 394 nucleotides Rru_A0598 and Rru_A0599 are separated by 194 nucleotides
Rru_A0597: Rru_A0597 - Protein of unknown function DUF1526 (NCBI), at 709,725 to 710,399
_A0597
Rru_A0598: Rru_A0598 - phosphate ABC transporter, periplasmic binding protein (NCBI), at 710,794 to 711,822
_A0598
Rru_A0599: Rru_A0599 - Phosphate ABC transporter, permease protein PstC (NCBI), at 712,017 to 713,414
_A0599
Position (kb) 710
711
712 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 709.836 kb on + strand, within Rru_A0597 at 709.837 kb on - strand, within Rru_A0597 at 709.837 kb on - strand, within Rru_A0597 at 709.840 kb on + strand, within Rru_A0597 at 709.840 kb on + strand, within Rru_A0597 at 709.840 kb on + strand, within Rru_A0597 at 709.841 kb on - strand, within Rru_A0597 at 709.841 kb on - strand, within Rru_A0597 at 709.883 kb on + strand, within Rru_A0597 at 709.883 kb on + strand, within Rru_A0597 at 709.883 kb on + strand, within Rru_A0597 at 709.883 kb on + strand, within Rru_A0597 at 709.883 kb on + strand, within Rru_A0597 at 709.884 kb on - strand, within Rru_A0597 at 709.924 kb on + strand, within Rru_A0597 at 709.935 kb on + strand, within Rru_A0597 at 709.935 kb on + strand, within Rru_A0597 at 710.000 kb on + strand, within Rru_A0597 at 710.147 kb on - strand, within Rru_A0597 at 710.290 kb on + strand, within Rru_A0597 at 710.299 kb on + strand, within Rru_A0597 at 710.300 kb on - strand, within Rru_A0597 at 710.300 kb on - strand, within Rru_A0597 at 710.300 kb on - strand, within Rru_A0597 at 710.475 kb on + strand at 710.475 kb on + strand at 710.601 kb on + strand at 710.601 kb on + strand at 710.708 kb on + strand at 710.709 kb on - strand at 710.747 kb on + strand at 710.791 kb on - strand at 711.820 kb on + strand at 711.820 kb on + strand at 712.798 kb on - strand, within Rru_A0599 at 712.798 kb on - strand, within Rru_A0599 at 712.800 kb on - strand, within Rru_A0599
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 709,836 + Rru_A0597 0.16 +0.3 709,837 - Rru_A0597 0.17 -0.9 709,837 - Rru_A0597 0.17 -0.7 709,840 + Rru_A0597 0.17 -1.4 709,840 + Rru_A0597 0.17 +0.3 709,840 + Rru_A0597 0.17 -0.9 709,841 - Rru_A0597 0.17 -0.6 709,841 - Rru_A0597 0.17 -0.6 709,883 + Rru_A0597 0.23 +0.9 709,883 + Rru_A0597 0.23 +1.9 709,883 + Rru_A0597 0.23 -0.3 709,883 + Rru_A0597 0.23 +0.1 709,883 + Rru_A0597 0.23 -1.2 709,884 - Rru_A0597 0.24 -0.9 709,924 + Rru_A0597 0.29 -0.3 709,935 + Rru_A0597 0.31 -1.2 709,935 + Rru_A0597 0.31 -0.9 710,000 + Rru_A0597 0.41 -2.2 710,147 - Rru_A0597 0.63 +0.3 710,290 + Rru_A0597 0.84 -0.9 710,299 + Rru_A0597 0.85 -0.5 710,300 - Rru_A0597 0.85 -0.2 710,300 - Rru_A0597 0.85 +1.2 710,300 - Rru_A0597 0.85 +0.6 710,475 + +1.1 710,475 + +1.9 710,601 + +1.2 710,601 + +2.3 710,708 + +7.8 710,709 - +0.5 710,747 + +7.9 710,791 - -2.5 711,820 + +0.2 711,820 + -3.1 712,798 - Rru_A0599 0.56 +0.2 712,798 - Rru_A0599 0.56 +1.9 712,800 - Rru_A0599 0.56 +0.4
Or see this region's nucleotide sequence