Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0593 and Rru_A0594 overlap by 1 nucleotides Rru_A0594 and Rru_A0595 are separated by 160 nucleotides Rru_A0595 and Rru_A0596 are separated by 143 nucleotides
Rru_A0593: Rru_A0593 - Twin-arginine translocation pathway signal (NCBI), at 704,544 to 705,452
_A0593
Rru_A0594: Rru_A0594 - Protein of unknown function UPF0191 (NCBI), at 705,452 to 706,078
_A0594
Rru_A0595: Rru_A0595 - transketolase (NCBI), at 706,239 to 708,221
_A0595
Rru_A0596: Rru_A0596 - Fructose-bisphosphate aldolase, class II, Calvin cycle subtype (NCBI), at 708,365 to 709,429
_A0596
Position (kb) 706
707
708
709 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 705.285 kb on + strand, within Rru_A0593 at 705.294 kb on + strand, within Rru_A0593 at 705.295 kb on - strand, within Rru_A0593 at 705.421 kb on - strand at 705.447 kb on + strand at 705.447 kb on + strand at 705.447 kb on + strand at 705.447 kb on + strand at 705.448 kb on - strand at 705.448 kb on - strand at 705.448 kb on - strand at 705.719 kb on + strand, within Rru_A0594 at 705.719 kb on + strand, within Rru_A0594 at 705.743 kb on + strand, within Rru_A0594 at 705.743 kb on + strand, within Rru_A0594 at 705.744 kb on - strand, within Rru_A0594 at 705.744 kb on - strand, within Rru_A0594 at 705.806 kb on + strand, within Rru_A0594 at 705.806 kb on + strand, within Rru_A0594 at 705.806 kb on + strand, within Rru_A0594 at 705.806 kb on + strand, within Rru_A0594 at 705.806 kb on + strand, within Rru_A0594 at 705.807 kb on - strand, within Rru_A0594 at 705.807 kb on - strand, within Rru_A0594 at 705.807 kb on - strand, within Rru_A0594 at 705.807 kb on - strand, within Rru_A0594 at 705.808 kb on + strand, within Rru_A0594 at 705.809 kb on - strand, within Rru_A0594 at 705.809 kb on - strand, within Rru_A0594 at 705.924 kb on - strand, within Rru_A0594 at 705.953 kb on + strand, within Rru_A0594 at 705.953 kb on + strand, within Rru_A0594 at 705.953 kb on + strand, within Rru_A0594 at 705.954 kb on - strand, within Rru_A0594 at 705.954 kb on - strand, within Rru_A0594 at 705.954 kb on - strand, within Rru_A0594 at 705.954 kb on - strand, within Rru_A0594 at 706.223 kb on + strand at 708.285 kb on + strand at 708.286 kb on - strand at 708.286 kb on - strand at 708.286 kb on - strand at 708.343 kb on + strand at 708.345 kb on + strand at 708.345 kb on + strand at 708.345 kb on + strand at 708.346 kb on - strand at 708.346 kb on - strand at 708.349 kb on + strand at 708.349 kb on + strand at 708.581 kb on + strand, within Rru_A0596 at 708.619 kb on + strand, within Rru_A0596 at 708.619 kb on + strand, within Rru_A0596 at 708.717 kb on - strand, within Rru_A0596 at 708.717 kb on - strand, within Rru_A0596 at 708.722 kb on + strand, within Rru_A0596 at 708.723 kb on - strand, within Rru_A0596 at 708.723 kb on - strand, within Rru_A0596 at 708.728 kb on + strand, within Rru_A0596 at 709.043 kb on - strand, within Rru_A0596 at 709.130 kb on + strand, within Rru_A0596 at 709.131 kb on - strand, within Rru_A0596
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 705,285 + Rru_A0593 0.82 -1.4 705,294 + Rru_A0593 0.83 +0.8 705,295 - Rru_A0593 0.83 -1.8 705,421 - -0.4 705,447 + +1.3 705,447 + -0.9 705,447 + +0.9 705,447 + -1.2 705,448 - -1.4 705,448 - -2.2 705,448 - -0.1 705,719 + Rru_A0594 0.43 -1.4 705,719 + Rru_A0594 0.43 +1.7 705,743 + Rru_A0594 0.46 +0.4 705,743 + Rru_A0594 0.46 +0.9 705,744 - Rru_A0594 0.47 -0.3 705,744 - Rru_A0594 0.47 +1.7 705,806 + Rru_A0594 0.56 -1.2 705,806 + Rru_A0594 0.56 +0.9 705,806 + Rru_A0594 0.56 -1.4 705,806 + Rru_A0594 0.56 +1.3 705,806 + Rru_A0594 0.56 -2.9 705,807 - Rru_A0594 0.57 +0.7 705,807 - Rru_A0594 0.57 +1.9 705,807 - Rru_A0594 0.57 -1.4 705,807 - Rru_A0594 0.57 +1.2 705,808 + Rru_A0594 0.57 +0.3 705,809 - Rru_A0594 0.57 -1.2 705,809 - Rru_A0594 0.57 -0.9 705,924 - Rru_A0594 0.75 +3.0 705,953 + Rru_A0594 0.80 -0.8 705,953 + Rru_A0594 0.80 -1.1 705,953 + Rru_A0594 0.80 +0.8 705,954 - Rru_A0594 0.80 +0.3 705,954 - Rru_A0594 0.80 +0.2 705,954 - Rru_A0594 0.80 +0.7 705,954 - Rru_A0594 0.80 -4.0 706,223 + -1.2 708,285 + +0.3 708,286 - -1.5 708,286 - -1.9 708,286 - -0.1 708,343 + +1.9 708,345 + -0.1 708,345 + -0.9 708,345 + +1.8 708,346 - -1.2 708,346 - -1.2 708,349 + -0.6 708,349 + -1.5 708,581 + Rru_A0596 0.20 -1.7 708,619 + Rru_A0596 0.24 -2.0 708,619 + Rru_A0596 0.24 -1.1 708,717 - Rru_A0596 0.33 -1.4 708,717 - Rru_A0596 0.33 -0.4 708,722 + Rru_A0596 0.34 -0.7 708,723 - Rru_A0596 0.34 +0.3 708,723 - Rru_A0596 0.34 -0.7 708,728 + Rru_A0596 0.34 -2.0 709,043 - Rru_A0596 0.64 -0.7 709,130 + Rru_A0596 0.72 -0.7 709,131 - Rru_A0596 0.72 +0.1
Or see this region's nucleotide sequence