Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0594

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0593 and Rru_A0594 overlap by 1 nucleotidesRru_A0594 and Rru_A0595 are separated by 160 nucleotides Rru_A0593: Rru_A0593 - Twin-arginine translocation pathway signal (NCBI), at 704,544 to 705,452 _A0593 Rru_A0594: Rru_A0594 - Protein of unknown function UPF0191 (NCBI), at 705,452 to 706,078 _A0594 Rru_A0595: Rru_A0595 - transketolase (NCBI), at 706,239 to 708,221 _A0595 Position (kb) 705 706 707Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.468 kb on + strandat 704.468 kb on + strandat 704.469 kb on - strandat 704.733 kb on + strand, within Rru_A0593at 704.733 kb on + strand, within Rru_A0593at 704.733 kb on + strand, within Rru_A0593at 704.733 kb on + strand, within Rru_A0593at 704.733 kb on + strand, within Rru_A0593at 704.734 kb on - strand, within Rru_A0593at 704.734 kb on - strand, within Rru_A0593at 704.783 kb on + strand, within Rru_A0593at 704.784 kb on - strand, within Rru_A0593at 704.898 kb on + strand, within Rru_A0593at 704.898 kb on + strand, within Rru_A0593at 704.898 kb on + strand, within Rru_A0593at 705.001 kb on - strand, within Rru_A0593at 705.001 kb on - strand, within Rru_A0593at 705.135 kb on + strand, within Rru_A0593at 705.135 kb on + strand, within Rru_A0593at 705.135 kb on + strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.285 kb on + strand, within Rru_A0593at 705.294 kb on + strand, within Rru_A0593at 705.295 kb on - strand, within Rru_A0593at 705.421 kb on - strandat 705.447 kb on + strandat 705.447 kb on + strandat 705.447 kb on + strandat 705.447 kb on + strandat 705.448 kb on - strandat 705.448 kb on - strandat 705.448 kb on - strandat 705.719 kb on + strand, within Rru_A0594at 705.719 kb on + strand, within Rru_A0594at 705.743 kb on + strand, within Rru_A0594at 705.743 kb on + strand, within Rru_A0594at 705.744 kb on - strand, within Rru_A0594at 705.744 kb on - strand, within Rru_A0594at 705.806 kb on + strand, within Rru_A0594at 705.806 kb on + strand, within Rru_A0594at 705.806 kb on + strand, within Rru_A0594at 705.806 kb on + strand, within Rru_A0594at 705.806 kb on + strand, within Rru_A0594at 705.807 kb on - strand, within Rru_A0594at 705.807 kb on - strand, within Rru_A0594at 705.807 kb on - strand, within Rru_A0594at 705.807 kb on - strand, within Rru_A0594at 705.808 kb on + strand, within Rru_A0594at 705.809 kb on - strand, within Rru_A0594at 705.809 kb on - strand, within Rru_A0594at 705.924 kb on - strand, within Rru_A0594at 705.953 kb on + strand, within Rru_A0594at 705.953 kb on + strand, within Rru_A0594at 705.953 kb on + strand, within Rru_A0594at 705.954 kb on - strand, within Rru_A0594at 705.954 kb on - strand, within Rru_A0594at 705.954 kb on - strand, within Rru_A0594at 705.954 kb on - strand, within Rru_A0594at 706.223 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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704,466 + -1.6
704,466 + +0.9
704,466 + +0.9
704,466 + -1.6
704,466 + -0.4
704,466 + -1.4
704,466 + -0.1
704,466 + -1.9
704,466 + +0.1
704,466 + +2.6
704,466 + -1.2
704,467 - -1.6
704,467 - +0.8
704,467 - -0.6
704,467 - -1.9
704,467 - -2.2
704,467 - -0.1
704,467 - -2.3
704,467 - -2.8
704,468 + -2.6
704,468 + -3.1
704,469 - +0.4
704,733 + Rru_A0593 0.21 +0.6
704,733 + Rru_A0593 0.21 -2.4
704,733 + Rru_A0593 0.21 -0.5
704,733 + Rru_A0593 0.21 -2.9
704,733 + Rru_A0593 0.21 -0.6
704,734 - Rru_A0593 0.21 -0.5
704,734 - Rru_A0593 0.21 -4.5
704,783 + Rru_A0593 0.26 -0.4
704,784 - Rru_A0593 0.26 -0.9
704,898 + Rru_A0593 0.39 +0.4
704,898 + Rru_A0593 0.39 +3.3
704,898 + Rru_A0593 0.39 -1.0
705,001 - Rru_A0593 0.50 +1.1
705,001 - Rru_A0593 0.50 +0.4
705,135 + Rru_A0593 0.65 +0.9
705,135 + Rru_A0593 0.65 +1.2
705,135 + Rru_A0593 0.65 +0.9
705,136 - Rru_A0593 0.65 +0.7
705,136 - Rru_A0593 0.65 -2.0
705,136 - Rru_A0593 0.65 -3.9
705,136 - Rru_A0593 0.65 -2.0
705,136 - Rru_A0593 0.65 +0.9
705,136 - Rru_A0593 0.65 -0.3
705,136 - Rru_A0593 0.65 -4.2
705,136 - Rru_A0593 0.65 -0.8
705,136 - Rru_A0593 0.65 +1.9
705,285 + Rru_A0593 0.82 -1.4
705,294 + Rru_A0593 0.83 +0.8
705,295 - Rru_A0593 0.83 -1.8
705,421 - -0.4
705,447 + +1.3
705,447 + -0.9
705,447 + +0.9
705,447 + -1.2
705,448 - -1.4
705,448 - -2.2
705,448 - -0.1
705,719 + Rru_A0594 0.43 -1.4
705,719 + Rru_A0594 0.43 +1.7
705,743 + Rru_A0594 0.46 +0.4
705,743 + Rru_A0594 0.46 +0.9
705,744 - Rru_A0594 0.47 -0.3
705,744 - Rru_A0594 0.47 +1.7
705,806 + Rru_A0594 0.56 -1.2
705,806 + Rru_A0594 0.56 +0.9
705,806 + Rru_A0594 0.56 -1.4
705,806 + Rru_A0594 0.56 +1.3
705,806 + Rru_A0594 0.56 -2.9
705,807 - Rru_A0594 0.57 +0.7
705,807 - Rru_A0594 0.57 +1.9
705,807 - Rru_A0594 0.57 -1.4
705,807 - Rru_A0594 0.57 +1.2
705,808 + Rru_A0594 0.57 +0.3
705,809 - Rru_A0594 0.57 -1.2
705,809 - Rru_A0594 0.57 -0.9
705,924 - Rru_A0594 0.75 +3.0
705,953 + Rru_A0594 0.80 -0.8
705,953 + Rru_A0594 0.80 -1.1
705,953 + Rru_A0594 0.80 +0.8
705,954 - Rru_A0594 0.80 +0.3
705,954 - Rru_A0594 0.80 +0.2
705,954 - Rru_A0594 0.80 +0.7
705,954 - Rru_A0594 0.80 -4.0
706,223 + -1.2

Or see this region's nucleotide sequence