Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0592

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0591 and Rru_A0592 are separated by 179 nucleotidesRru_A0592 and Rru_A0593 are separated by 245 nucleotides Rru_A0591: Rru_A0591 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 701,555 to 702,481 _A0591 Rru_A0592: Rru_A0592 - extracellular solute-binding protein, family 5 (NCBI), at 702,661 to 704,298 _A0592 Rru_A0593: Rru_A0593 - Twin-arginine translocation pathway signal (NCBI), at 704,544 to 705,452 _A0593 Position (kb) 702 703 704 705Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 701.697 kb on + strand, within Rru_A0591at 701.697 kb on + strand, within Rru_A0591at 701.697 kb on + strand, within Rru_A0591at 701.698 kb on - strand, within Rru_A0591at 701.698 kb on - strand, within Rru_A0591at 701.778 kb on + strand, within Rru_A0591at 701.779 kb on - strand, within Rru_A0591at 701.779 kb on - strand, within Rru_A0591at 701.779 kb on - strand, within Rru_A0591at 701.880 kb on - strand, within Rru_A0591at 701.880 kb on - strand, within Rru_A0591at 701.880 kb on - strand, within Rru_A0591at 701.917 kb on + strand, within Rru_A0591at 701.917 kb on + strand, within Rru_A0591at 701.919 kb on + strand, within Rru_A0591at 701.919 kb on + strand, within Rru_A0591at 701.919 kb on + strand, within Rru_A0591at 701.920 kb on - strand, within Rru_A0591at 701.920 kb on - strand, within Rru_A0591at 701.964 kb on + strand, within Rru_A0591at 701.965 kb on - strand, within Rru_A0591at 701.970 kb on - strand, within Rru_A0591at 702.155 kb on + strand, within Rru_A0591at 702.294 kb on + strand, within Rru_A0591at 702.295 kb on - strand, within Rru_A0591at 702.322 kb on + strand, within Rru_A0591at 702.322 kb on + strand, within Rru_A0591at 702.323 kb on - strand, within Rru_A0591at 702.324 kb on + strand, within Rru_A0591at 702.325 kb on - strand, within Rru_A0591at 702.325 kb on - strand, within Rru_A0591at 702.476 kb on + strandat 702.476 kb on + strandat 702.476 kb on + strandat 702.476 kb on + strandat 702.476 kb on + strandat 702.477 kb on - strandat 702.477 kb on - strandat 702.477 kb on - strandat 702.477 kb on - strandat 702.656 kb on - strandat 702.656 kb on - strandat 702.663 kb on - strandat 702.663 kb on - strandat 702.752 kb on + strandat 702.752 kb on + strandat 702.753 kb on - strandat 702.753 kb on - strandat 702.755 kb on + strandat 702.756 kb on - strandat 702.759 kb on - strandat 702.759 kb on - strandat 702.869 kb on + strand, within Rru_A0592at 702.870 kb on - strand, within Rru_A0592at 702.870 kb on - strand, within Rru_A0592at 702.951 kb on - strand, within Rru_A0592at 703.113 kb on - strand, within Rru_A0592at 703.113 kb on - strand, within Rru_A0592at 703.113 kb on - strand, within Rru_A0592at 703.235 kb on + strand, within Rru_A0592at 703.235 kb on + strand, within Rru_A0592at 703.236 kb on - strand, within Rru_A0592at 703.236 kb on - strand, within Rru_A0592at 703.236 kb on - strand, within Rru_A0592at 703.236 kb on - strand, within Rru_A0592at 703.236 kb on - strand, within Rru_A0592at 703.385 kb on + strand, within Rru_A0592at 703.385 kb on + strand, within Rru_A0592at 703.385 kb on + strand, within Rru_A0592at 703.386 kb on - strand, within Rru_A0592at 703.386 kb on - strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.391 kb on + strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.392 kb on - strand, within Rru_A0592at 703.403 kb on + strand, within Rru_A0592at 703.479 kb on + strand, within Rru_A0592at 703.480 kb on - strand, within Rru_A0592at 703.530 kb on - strand, within Rru_A0592at 703.574 kb on + strand, within Rru_A0592at 703.575 kb on - strand, within Rru_A0592at 703.575 kb on - strand, within Rru_A0592at 703.632 kb on + strand, within Rru_A0592at 703.633 kb on - strand, within Rru_A0592at 703.634 kb on + strand, within Rru_A0592at 703.745 kb on + strand, within Rru_A0592at 703.833 kb on + strand, within Rru_A0592at 703.833 kb on + strand, within Rru_A0592at 703.833 kb on + strand, within Rru_A0592at 703.833 kb on + strand, within Rru_A0592at 703.835 kb on + strand, within Rru_A0592at 703.836 kb on - strand, within Rru_A0592at 703.836 kb on - strand, within Rru_A0592at 703.857 kb on + strand, within Rru_A0592at 703.857 kb on + strand, within Rru_A0592at 703.857 kb on + strand, within Rru_A0592at 703.857 kb on + strand, within Rru_A0592at 703.857 kb on + strand, within Rru_A0592at 703.857 kb on + strand, within Rru_A0592at 703.858 kb on - strand, within Rru_A0592at 703.858 kb on - strand, within Rru_A0592at 703.858 kb on - strand, within Rru_A0592at 703.859 kb on + strand, within Rru_A0592at 703.859 kb on + strand, within Rru_A0592at 703.860 kb on - strand, within Rru_A0592at 703.860 kb on - strand, within Rru_A0592at 703.916 kb on + strand, within Rru_A0592at 703.980 kb on + strand, within Rru_A0592at 703.980 kb on + strand, within Rru_A0592at 703.981 kb on - strand, within Rru_A0592at 703.982 kb on + strand, within Rru_A0592at 703.982 kb on + strand, within Rru_A0592at 703.982 kb on + strand, within Rru_A0592at 703.982 kb on + strand, within Rru_A0592at 703.982 kb on + strand, within Rru_A0592at 703.983 kb on - strand, within Rru_A0592at 704.069 kb on + strand, within Rru_A0592at 704.069 kb on + strand, within Rru_A0592at 704.069 kb on + strand, within Rru_A0592at 704.069 kb on + strand, within Rru_A0592at 704.069 kb on + strand, within Rru_A0592at 704.069 kb on + strand, within Rru_A0592at 704.069 kb on + strand, within Rru_A0592at 704.070 kb on - strand, within Rru_A0592at 704.070 kb on - strand, within Rru_A0592at 704.070 kb on - strand, within Rru_A0592at 704.070 kb on - strand, within Rru_A0592at 704.070 kb on - strand, within Rru_A0592at 704.073 kb on + strand, within Rru_A0592at 704.073 kb on + strand, within Rru_A0592at 704.073 kb on + strand, within Rru_A0592at 704.074 kb on - strand, within Rru_A0592at 704.074 kb on - strand, within Rru_A0592at 704.074 kb on - strand, within Rru_A0592at 704.074 kb on - strand, within Rru_A0592at 704.074 kb on - strand, within Rru_A0592at 704.074 kb on - strand, within Rru_A0592at 704.074 kb on - strand, within Rru_A0592at 704.156 kb on - strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.466 kb on + strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.467 kb on - strandat 704.468 kb on + strandat 704.468 kb on + strandat 704.469 kb on - strandat 704.733 kb on + strand, within Rru_A0593at 704.733 kb on + strand, within Rru_A0593at 704.733 kb on + strand, within Rru_A0593at 704.733 kb on + strand, within Rru_A0593at 704.733 kb on + strand, within Rru_A0593at 704.734 kb on - strand, within Rru_A0593at 704.734 kb on - strand, within Rru_A0593at 704.783 kb on + strand, within Rru_A0593at 704.784 kb on - strand, within Rru_A0593at 704.898 kb on + strand, within Rru_A0593at 704.898 kb on + strand, within Rru_A0593at 704.898 kb on + strand, within Rru_A0593at 705.001 kb on - strand, within Rru_A0593at 705.001 kb on - strand, within Rru_A0593at 705.135 kb on + strand, within Rru_A0593at 705.135 kb on + strand, within Rru_A0593at 705.135 kb on + strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.136 kb on - strand, within Rru_A0593at 705.285 kb on + strand, within Rru_A0593at 705.294 kb on + strand, within Rru_A0593at 705.295 kb on - strand, within Rru_A0593

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
701,697 + Rru_A0591 0.15 +1.4
701,697 + Rru_A0591 0.15 +0.2
701,697 + Rru_A0591 0.15 +1.4
701,698 - Rru_A0591 0.15 +1.0
701,698 - Rru_A0591 0.15 -0.9
701,778 + Rru_A0591 0.24 +2.5
701,779 - Rru_A0591 0.24 +2.0
701,779 - Rru_A0591 0.24 +2.6
701,779 - Rru_A0591 0.24 +0.5
701,880 - Rru_A0591 0.35 -2.6
701,880 - Rru_A0591 0.35 -0.8
701,880 - Rru_A0591 0.35 -0.4
701,917 + Rru_A0591 0.39 -0.3
701,917 + Rru_A0591 0.39 -0.8
701,919 + Rru_A0591 0.39 +1.2
701,919 + Rru_A0591 0.39 -0.4
701,919 + Rru_A0591 0.39 +0.0
701,920 - Rru_A0591 0.39 -0.7
701,920 - Rru_A0591 0.39 +1.0
701,964 + Rru_A0591 0.44 +1.3
701,965 - Rru_A0591 0.44 +1.3
701,970 - Rru_A0591 0.45 +1.3
702,155 + Rru_A0591 0.65 -0.4
702,294 + Rru_A0591 0.80 -0.8
702,295 - Rru_A0591 0.80 -1.6
702,322 + Rru_A0591 0.83 -0.6
702,322 + Rru_A0591 0.83 -0.4
702,323 - Rru_A0591 0.83 +3.3
702,324 + Rru_A0591 0.83 -0.2
702,325 - Rru_A0591 0.83 +0.4
702,325 - Rru_A0591 0.83 -0.6
702,476 + -2.1
702,476 + -0.4
702,476 + +2.4
702,476 + -1.2
702,476 + -1.4
702,477 - -1.4
702,477 - -0.0
702,477 - -0.0
702,477 - -0.4
702,656 - +1.0
702,656 - -2.6
702,663 - +1.0
702,663 - -1.0
702,752 + +0.1
702,752 + -3.3
702,753 - -1.2
702,753 - -3.0
702,755 + -2.0
702,756 - -0.9
702,759 - +0.4
702,759 - -1.6
702,869 + Rru_A0592 0.13 +1.5
702,870 - Rru_A0592 0.13 +2.2
702,870 - Rru_A0592 0.13 -1.7
702,951 - Rru_A0592 0.18 -2.4
703,113 - Rru_A0592 0.28 +1.4
703,113 - Rru_A0592 0.28 +0.1
703,113 - Rru_A0592 0.28 -0.3
703,235 + Rru_A0592 0.35 +0.6
703,235 + Rru_A0592 0.35 +1.2
703,236 - Rru_A0592 0.35 +0.6
703,236 - Rru_A0592 0.35 -0.6
703,236 - Rru_A0592 0.35 +1.4
703,236 - Rru_A0592 0.35 +0.8
703,236 - Rru_A0592 0.35 +1.0
703,385 + Rru_A0592 0.44 -3.0
703,385 + Rru_A0592 0.44 +0.4
703,385 + Rru_A0592 0.44 -0.1
703,386 - Rru_A0592 0.44 +1.6
703,386 - Rru_A0592 0.44 +0.5
703,391 + Rru_A0592 0.45 +1.6
703,391 + Rru_A0592 0.45 -2.2
703,391 + Rru_A0592 0.45 +0.2
703,391 + Rru_A0592 0.45 -2.3
703,391 + Rru_A0592 0.45 +2.0
703,391 + Rru_A0592 0.45 +0.3
703,391 + Rru_A0592 0.45 -1.0
703,391 + Rru_A0592 0.45 -2.5
703,391 + Rru_A0592 0.45 -0.9
703,392 - Rru_A0592 0.45 +2.5
703,392 - Rru_A0592 0.45 +1.6
703,392 - Rru_A0592 0.45 -0.0
703,392 - Rru_A0592 0.45 +2.0
703,392 - Rru_A0592 0.45 -0.0
703,392 - Rru_A0592 0.45 -0.2
703,392 - Rru_A0592 0.45 -1.4
703,392 - Rru_A0592 0.45 +0.7
703,392 - Rru_A0592 0.45 +1.0
703,392 - Rru_A0592 0.45 +0.3
703,392 - Rru_A0592 0.45 +1.0
703,392 - Rru_A0592 0.45 +1.7
703,392 - Rru_A0592 0.45 -0.0
703,392 - Rru_A0592 0.45 +2.2
703,392 - Rru_A0592 0.45 +1.0
703,403 + Rru_A0592 0.45 -1.2
703,479 + Rru_A0592 0.50 +4.3
703,480 - Rru_A0592 0.50 +1.6
703,530 - Rru_A0592 0.53 +2.5
703,574 + Rru_A0592 0.56 -0.0
703,575 - Rru_A0592 0.56 +2.0
703,575 - Rru_A0592 0.56 +0.4
703,632 + Rru_A0592 0.59 -0.0
703,633 - Rru_A0592 0.59 -0.4
703,634 + Rru_A0592 0.59 -0.9
703,745 + Rru_A0592 0.66 -2.9
703,833 + Rru_A0592 0.72 +0.6
703,833 + Rru_A0592 0.72 +0.0
703,833 + Rru_A0592 0.72 -1.0
703,833 + Rru_A0592 0.72 -0.5
703,835 + Rru_A0592 0.72 -0.5
703,836 - Rru_A0592 0.72 -1.5
703,836 - Rru_A0592 0.72 +1.2
703,857 + Rru_A0592 0.73 +0.7
703,857 + Rru_A0592 0.73 +0.0
703,857 + Rru_A0592 0.73 +1.0
703,857 + Rru_A0592 0.73 +1.1
703,857 + Rru_A0592 0.73 +0.4
703,857 + Rru_A0592 0.73 +1.0
703,858 - Rru_A0592 0.73 -0.5
703,858 - Rru_A0592 0.73 -0.6
703,858 - Rru_A0592 0.73 +1.4
703,859 + Rru_A0592 0.73 -1.4
703,859 + Rru_A0592 0.73 +1.3
703,860 - Rru_A0592 0.73 -0.6
703,860 - Rru_A0592 0.73 +1.0
703,916 + Rru_A0592 0.77 -1.0
703,980 + Rru_A0592 0.81 +1.5
703,980 + Rru_A0592 0.81 -2.4
703,981 - Rru_A0592 0.81 -0.9
703,982 + Rru_A0592 0.81 +0.7
703,982 + Rru_A0592 0.81 -0.1
703,982 + Rru_A0592 0.81 -2.2
703,982 + Rru_A0592 0.81 -0.6
703,982 + Rru_A0592 0.81 +3.5
703,983 - Rru_A0592 0.81 +0.4
704,069 + Rru_A0592 0.86 -2.0
704,069 + Rru_A0592 0.86 +0.7
704,069 + Rru_A0592 0.86 -3.9
704,069 + Rru_A0592 0.86 +2.9
704,069 + Rru_A0592 0.86 +1.5
704,069 + Rru_A0592 0.86 -2.6
704,069 + Rru_A0592 0.86 -3.4
704,070 - Rru_A0592 0.86 +2.5
704,070 - Rru_A0592 0.86 +3.1
704,070 - Rru_A0592 0.86 -0.9
704,070 - Rru_A0592 0.86 +1.0
704,070 - Rru_A0592 0.86 +2.2
704,073 + Rru_A0592 0.86 +1.3
704,073 + Rru_A0592 0.86 -1.0
704,073 + Rru_A0592 0.86 +1.1
704,074 - Rru_A0592 0.86 +1.0
704,074 - Rru_A0592 0.86 +1.2
704,074 - Rru_A0592 0.86 +1.6
704,074 - Rru_A0592 0.86 +3.5
704,074 - Rru_A0592 0.86 +1.6
704,074 - Rru_A0592 0.86 -0.2
704,074 - Rru_A0592 0.86 -0.0
704,156 - +1.0
704,466 + -1.6
704,466 + +0.9
704,466 + +0.9
704,466 + -1.6
704,466 + -0.4
704,466 + -1.4
704,466 + -0.1
704,466 + -1.9
704,466 + +0.1
704,466 + +2.6
704,466 + -1.2
704,467 - -1.6
704,467 - +0.8
704,467 - -0.6
704,467 - -1.9
704,467 - -2.2
704,467 - -0.1
704,467 - -2.3
704,467 - -2.8
704,468 + -2.6
704,468 + -3.1
704,469 - +0.4
704,733 + Rru_A0593 0.21 +0.6
704,733 + Rru_A0593 0.21 -2.4
704,733 + Rru_A0593 0.21 -0.5
704,733 + Rru_A0593 0.21 -2.9
704,733 + Rru_A0593 0.21 -0.6
704,734 - Rru_A0593 0.21 -0.5
704,734 - Rru_A0593 0.21 -4.5
704,783 + Rru_A0593 0.26 -0.4
704,784 - Rru_A0593 0.26 -0.9
704,898 + Rru_A0593 0.39 +0.4
704,898 + Rru_A0593 0.39 +3.3
704,898 + Rru_A0593 0.39 -1.0
705,001 - Rru_A0593 0.50 +1.1
705,001 - Rru_A0593 0.50 +0.4
705,135 + Rru_A0593 0.65 +0.9
705,135 + Rru_A0593 0.65 +1.2
705,135 + Rru_A0593 0.65 +0.9
705,136 - Rru_A0593 0.65 +0.7
705,136 - Rru_A0593 0.65 -2.0
705,136 - Rru_A0593 0.65 -3.9
705,136 - Rru_A0593 0.65 -2.0
705,136 - Rru_A0593 0.65 +0.9
705,136 - Rru_A0593 0.65 -0.3
705,136 - Rru_A0593 0.65 -4.2
705,136 - Rru_A0593 0.65 -0.8
705,136 - Rru_A0593 0.65 +1.9
705,285 + Rru_A0593 0.82 -1.4
705,294 + Rru_A0593 0.83 +0.8
705,295 - Rru_A0593 0.83 -1.8

Or see this region's nucleotide sequence