Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0582

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0581 and Rru_A0582 overlap by 14 nucleotidesRru_A0582 and Rru_A0583 are separated by 15 nucleotides Rru_A0581: Rru_A0581 - Three-deoxy-D-manno-octulosonic-acidtransferase-like (NCBI), at 690,002 to 691,318 _A0581 Rru_A0582: Rru_A0582 - Tetraacyldisaccharide 4'-kinase (NCBI), at 691,305 to 692,300 _A0582 Rru_A0583: Rru_A0583 - Glycosyl transferase, group 1 (NCBI), at 692,316 to 693,602 _A0583 Position (kb) 691 692 693Strain fitness (log2 ratio) -3 -2 -1 0 1at 692.298 kb on + strandat 692.299 kb on - strandat 692.299 kb on - strandat 692.790 kb on + strand, within Rru_A0583at 692.901 kb on - strand, within Rru_A0583at 692.948 kb on + strand, within Rru_A0583

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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692,298 + -0.3
692,299 - +0.0
692,299 - -1.5
692,790 + Rru_A0583 0.37 +0.0
692,901 - Rru_A0583 0.45 -1.3
692,948 + Rru_A0583 0.49 -3.1

Or see this region's nucleotide sequence