Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0579 and Rru_A0580 are separated by 91 nucleotides Rru_A0580 and Rru_A0581 are separated by 173 nucleotides Rru_A0581 and Rru_A0582 overlap by 14 nucleotides Rru_A0582 and Rru_A0583 are separated by 15 nucleotides
Rru_A0579: Rru_A0579 - Glycosyl transferase, group 1 (NCBI), at 688,229 to 689,302
_A0579
Rru_A0580: Rru_A0580 - OsmC-like protein (NCBI), at 689,394 to 689,828
_A0580
Rru_A0581: Rru_A0581 - Three-deoxy-D-manno-octulosonic-acidtransferase-like (NCBI), at 690,002 to 691,318
_A0581
Rru_A0582: Rru_A0582 - Tetraacyldisaccharide 4'-kinase (NCBI), at 691,305 to 692,300
_A0582
Rru_A0583: Rru_A0583 - Glycosyl transferase, group 1 (NCBI), at 692,316 to 693,602
_A0583
Position (kb) 690
691
692 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 689.054 kb on + strand, within Rru_A0579 at 689.301 kb on - strand at 689.311 kb on + strand at 689.311 kb on + strand at 689.311 kb on + strand at 689.311 kb on + strand at 689.311 kb on + strand at 689.312 kb on - strand at 689.312 kb on - strand at 689.312 kb on - strand at 689.312 kb on - strand at 689.313 kb on + strand at 689.313 kb on + strand at 689.313 kb on + strand at 689.313 kb on + strand at 689.314 kb on - strand at 689.314 kb on - strand at 689.484 kb on + strand, within Rru_A0580 at 689.484 kb on + strand, within Rru_A0580 at 689.484 kb on + strand, within Rru_A0580 at 689.484 kb on + strand, within Rru_A0580 at 689.601 kb on - strand, within Rru_A0580 at 689.826 kb on + strand at 689.826 kb on + strand at 689.826 kb on + strand at 689.826 kb on + strand at 689.826 kb on + strand at 689.826 kb on + strand at 689.827 kb on - strand at 689.827 kb on - strand at 689.966 kb on + strand at 689.966 kb on + strand at 692.298 kb on + strand at 692.299 kb on - strand at 692.299 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 689,054 + Rru_A0579 0.77 -1.6 689,301 - -1.3 689,311 + -1.0 689,311 + +3.0 689,311 + -1.6 689,311 + -0.7 689,311 + +0.4 689,312 - -4.0 689,312 - -1.5 689,312 - +0.3 689,312 - +0.3 689,313 + +0.6 689,313 + -1.0 689,313 + -1.7 689,313 + +2.2 689,314 - -1.0 689,314 - +1.2 689,484 + Rru_A0580 0.21 -3.0 689,484 + Rru_A0580 0.21 -0.3 689,484 + Rru_A0580 0.21 -0.6 689,484 + Rru_A0580 0.21 +3.0 689,601 - Rru_A0580 0.48 -2.6 689,826 + -1.4 689,826 + +2.0 689,826 + -1.8 689,826 + -1.0 689,826 + +0.4 689,826 + +0.7 689,827 - +2.0 689,827 - -0.7 689,966 + -0.1 689,966 + -0.8 692,298 + -0.3 692,299 - +0.0 692,299 - -1.5
Or see this region's nucleotide sequence