Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0576 and Rru_A0577 are separated by 23 nucleotides Rru_A0577 and Rru_A0578 are separated by 234 nucleotides
Rru_A0576: Rru_A0576 - chemotaxis sensory transducer (NCBI), at 683,909 to 685,975
_A0576
Rru_A0577: Rru_A0577 - hypothetical protein (NCBI), at 685,999 to 686,970
_A0577
Rru_A0578: Rru_A0578 - Metallophosphoesterase (NCBI), at 687,205 to 688,182
_A0578
Position (kb) 685
686
687 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 685.825 kb on - strand at 685.825 kb on - strand at 686.001 kb on - strand at 686.064 kb on + strand at 686.064 kb on + strand at 686.065 kb on - strand at 686.076 kb on + strand at 686.193 kb on - strand, within Rru_A0577 at 686.409 kb on + strand, within Rru_A0577 at 686.420 kb on + strand, within Rru_A0577 at 686.420 kb on + strand, within Rru_A0577 at 686.420 kb on + strand, within Rru_A0577 at 686.420 kb on + strand, within Rru_A0577 at 686.421 kb on - strand, within Rru_A0577 at 686.561 kb on + strand, within Rru_A0577 at 686.561 kb on + strand, within Rru_A0577 at 686.561 kb on + strand, within Rru_A0577 at 686.562 kb on - strand, within Rru_A0577 at 686.562 kb on - strand, within Rru_A0577 at 686.562 kb on - strand, within Rru_A0577 at 686.905 kb on - strand at 687.011 kb on - strand at 687.193 kb on + strand at 687.436 kb on + strand, within Rru_A0578 at 687.436 kb on + strand, within Rru_A0578 at 687.436 kb on + strand, within Rru_A0578 at 687.436 kb on + strand, within Rru_A0578 at 687.437 kb on - strand, within Rru_A0578 at 687.437 kb on - strand, within Rru_A0578 at 687.437 kb on - strand, within Rru_A0578 at 687.437 kb on - strand, within Rru_A0578 at 687.592 kb on + strand, within Rru_A0578 at 687.706 kb on + strand, within Rru_A0578 at 687.706 kb on + strand, within Rru_A0578 at 687.742 kb on + strand, within Rru_A0578 at 687.742 kb on + strand, within Rru_A0578 at 687.743 kb on - strand, within Rru_A0578 at 687.743 kb on - strand, within Rru_A0578 at 687.743 kb on - strand, within Rru_A0578 at 687.762 kb on + strand, within Rru_A0578 at 687.806 kb on - strand, within Rru_A0578 at 687.824 kb on - strand, within Rru_A0578 at 687.856 kb on + strand, within Rru_A0578 at 687.856 kb on + strand, within Rru_A0578 at 687.856 kb on + strand, within Rru_A0578 at 687.856 kb on + strand, within Rru_A0578
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 685,825 - -1.5 685,825 - +2.4 686,001 - +1.0 686,064 + -2.3 686,064 + -1.6 686,065 - -1.7 686,076 + +1.4 686,193 - Rru_A0577 0.20 +2.0 686,409 + Rru_A0577 0.42 -1.8 686,420 + Rru_A0577 0.43 +1.0 686,420 + Rru_A0577 0.43 +0.8 686,420 + Rru_A0577 0.43 +0.1 686,420 + Rru_A0577 0.43 -0.2 686,421 - Rru_A0577 0.43 +0.4 686,561 + Rru_A0577 0.58 +2.4 686,561 + Rru_A0577 0.58 -1.0 686,561 + Rru_A0577 0.58 -1.3 686,562 - Rru_A0577 0.58 -0.6 686,562 - Rru_A0577 0.58 +2.7 686,562 - Rru_A0577 0.58 -1.8 686,905 - -0.5 687,011 - -0.6 687,193 + -0.2 687,436 + Rru_A0578 0.24 +0.5 687,436 + Rru_A0578 0.24 -2.5 687,436 + Rru_A0578 0.24 -1.8 687,436 + Rru_A0578 0.24 -0.2 687,437 - Rru_A0578 0.24 -0.2 687,437 - Rru_A0578 0.24 -1.8 687,437 - Rru_A0578 0.24 +0.6 687,437 - Rru_A0578 0.24 -0.9 687,592 + Rru_A0578 0.40 -0.4 687,706 + Rru_A0578 0.51 -2.7 687,706 + Rru_A0578 0.51 -0.7 687,742 + Rru_A0578 0.55 -0.0 687,742 + Rru_A0578 0.55 +0.1 687,743 - Rru_A0578 0.55 -0.0 687,743 - Rru_A0578 0.55 -0.2 687,743 - Rru_A0578 0.55 -0.1 687,762 + Rru_A0578 0.57 -2.0 687,806 - Rru_A0578 0.61 -1.6 687,824 - Rru_A0578 0.63 -3.8 687,856 + Rru_A0578 0.67 +3.1 687,856 + Rru_A0578 0.67 +1.5 687,856 + Rru_A0578 0.67 -0.4 687,856 + Rru_A0578 0.67 -1.2
Or see this region's nucleotide sequence