Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0570 and Rru_A0571 are separated by 92 nucleotides Rru_A0571 and Rru_A0572 are separated by 130 nucleotides Rru_A0572 and Rru_A0573 overlap by 11 nucleotides Rru_A0573 and Rru_A0574 are separated by 108 nucleotides
Rru_A0570: Rru_A0570 - Glutamate--cysteine ligase (NCBI), at 676,783 to 678,153
_A0570
Rru_A0571: Rru_A0571 - hypothetical protein (NCBI), at 678,246 to 678,989
_A0571
Rru_A0572: Rru_A0572 - 4-hydroxybenzoate polyprenyl transferase (NCBI), at 679,120 to 680,043
_A0572
Rru_A0573: Rru_A0573 - hypothetical protein (NCBI), at 680,033 to 680,683
_A0573
Rru_A0574: Rru_A0574 - Carboxylyase-related protein (NCBI), at 680,792 to 682,315
_A0574
Position (kb) 679
680
681 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 678.248 kb on - strand at 678.347 kb on + strand, within Rru_A0571 at 678.347 kb on + strand, within Rru_A0571 at 678.347 kb on + strand, within Rru_A0571 at 678.348 kb on - strand, within Rru_A0571 at 678.348 kb on - strand, within Rru_A0571 at 678.426 kb on + strand, within Rru_A0571 at 678.427 kb on - strand, within Rru_A0571 at 678.522 kb on + strand, within Rru_A0571 at 678.522 kb on + strand, within Rru_A0571 at 678.523 kb on - strand, within Rru_A0571 at 678.523 kb on - strand, within Rru_A0571 at 678.700 kb on + strand, within Rru_A0571 at 678.700 kb on + strand, within Rru_A0571 at 678.701 kb on - strand, within Rru_A0571 at 678.701 kb on - strand, within Rru_A0571 at 678.701 kb on - strand, within Rru_A0571 at 678.899 kb on - strand, within Rru_A0571 at 678.899 kb on - strand, within Rru_A0571 at 678.958 kb on + strand at 678.958 kb on + strand at 678.959 kb on - strand at 678.959 kb on - strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.040 kb on + strand at 679.047 kb on + strand at 679.047 kb on + strand at 679.049 kb on + strand at 679.049 kb on + strand at 679.050 kb on - strand at 680.111 kb on + strand, within Rru_A0573 at 680.111 kb on + strand, within Rru_A0573 at 680.112 kb on - strand, within Rru_A0573 at 680.112 kb on - strand, within Rru_A0573 at 680.112 kb on - strand, within Rru_A0573 at 680.186 kb on + strand, within Rru_A0573 at 680.609 kb on + strand, within Rru_A0573 at 680.609 kb on + strand, within Rru_A0573 at 680.609 kb on + strand, within Rru_A0573 at 680.721 kb on + strand at 680.721 kb on + strand at 680.721 kb on + strand at 680.721 kb on + strand at 680.721 kb on + strand at 680.721 kb on + strand at 680.722 kb on - strand at 680.722 kb on - strand at 680.722 kb on - strand at 680.722 kb on - strand at 680.843 kb on - strand at 680.970 kb on - strand, within Rru_A0574 at 680.992 kb on + strand, within Rru_A0574 at 680.993 kb on - strand, within Rru_A0574
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 678,248 - +1.4 678,347 + Rru_A0571 0.14 -2.4 678,347 + Rru_A0571 0.14 -0.0 678,347 + Rru_A0571 0.14 -0.9 678,348 - Rru_A0571 0.14 +4.9 678,348 - Rru_A0571 0.14 +3.4 678,426 + Rru_A0571 0.24 +4.5 678,427 - Rru_A0571 0.24 +4.8 678,522 + Rru_A0571 0.37 +3.9 678,522 + Rru_A0571 0.37 +5.1 678,523 - Rru_A0571 0.37 +4.6 678,523 - Rru_A0571 0.37 +4.0 678,700 + Rru_A0571 0.61 +1.0 678,700 + Rru_A0571 0.61 +2.9 678,701 - Rru_A0571 0.61 +4.3 678,701 - Rru_A0571 0.61 +4.6 678,701 - Rru_A0571 0.61 +4.9 678,899 - Rru_A0571 0.88 +5.1 678,899 - Rru_A0571 0.88 +4.2 678,958 + +4.3 678,958 + +4.3 678,959 - +3.8 678,959 - +4.2 679,035 + -1.5 679,035 + +1.0 679,035 + -0.9 679,035 + +0.5 679,035 + +1.1 679,036 - -2.1 679,036 - -0.0 679,036 - -1.0 679,036 - +2.0 679,036 - -1.7 679,040 + +2.0 679,047 + -0.8 679,047 + +1.7 679,049 + -0.0 679,049 + -0.6 679,050 - -1.3 680,111 + Rru_A0573 0.12 -1.6 680,111 + Rru_A0573 0.12 +0.5 680,112 - Rru_A0573 0.12 -0.1 680,112 - Rru_A0573 0.12 -2.2 680,112 - Rru_A0573 0.12 -1.0 680,186 + Rru_A0573 0.24 -0.2 680,609 + Rru_A0573 0.88 -0.2 680,609 + Rru_A0573 0.88 -1.6 680,609 + Rru_A0573 0.88 +1.2 680,721 + -1.8 680,721 + -0.8 680,721 + -0.1 680,721 + +2.0 680,721 + +0.1 680,721 + -2.4 680,722 - -0.5 680,722 - +2.4 680,722 - -0.7 680,722 - +0.8 680,843 - -0.4 680,970 - Rru_A0574 0.12 -0.0 680,992 + Rru_A0574 0.13 -1.2 680,993 - Rru_A0574 0.13 -1.2
Or see this region's nucleotide sequence