Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0568 and Rru_A0569 are separated by 260 nucleotides Rru_A0569 and Rru_A0570 are separated by 59 nucleotides Rru_A0570 and Rru_A0571 are separated by 92 nucleotides Rru_A0571 and Rru_A0572 are separated by 130 nucleotides
Rru_A0568: Rru_A0568 - chemotaxis sensory transducer (NCBI), at 674,130 to 676,118
_A0568
Rru_A0569: Rru_A0569 - Chorismate mutase (NCBI), at 676,379 to 676,723
_A0569
Rru_A0570: Rru_A0570 - Glutamate--cysteine ligase (NCBI), at 676,783 to 678,153
_A0570
Rru_A0571: Rru_A0571 - hypothetical protein (NCBI), at 678,246 to 678,989
_A0571
Rru_A0572: Rru_A0572 - 4-hydroxybenzoate polyprenyl transferase (NCBI), at 679,120 to 680,043
_A0572
Position (kb) 676
677
678
679 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 676.030 kb on + strand at 676.031 kb on - strand at 676.031 kb on - strand at 676.031 kb on - strand at 676.168 kb on - strand at 676.298 kb on + strand at 676.298 kb on + strand at 676.368 kb on + strand at 676.564 kb on + strand, within Rru_A0569 at 676.565 kb on - strand, within Rru_A0569 at 676.566 kb on + strand, within Rru_A0569 at 676.566 kb on + strand, within Rru_A0569 at 676.567 kb on - strand, within Rru_A0569 at 676.588 kb on - strand, within Rru_A0569 at 676.588 kb on - strand, within Rru_A0569 at 676.588 kb on - strand, within Rru_A0569 at 676.695 kb on + strand at 676.784 kb on + strand at 676.787 kb on + strand at 678.248 kb on - strand at 678.347 kb on + strand, within Rru_A0571 at 678.347 kb on + strand, within Rru_A0571 at 678.347 kb on + strand, within Rru_A0571 at 678.348 kb on - strand, within Rru_A0571 at 678.348 kb on - strand, within Rru_A0571 at 678.426 kb on + strand, within Rru_A0571 at 678.427 kb on - strand, within Rru_A0571 at 678.522 kb on + strand, within Rru_A0571 at 678.522 kb on + strand, within Rru_A0571 at 678.523 kb on - strand, within Rru_A0571 at 678.523 kb on - strand, within Rru_A0571 at 678.700 kb on + strand, within Rru_A0571 at 678.700 kb on + strand, within Rru_A0571 at 678.701 kb on - strand, within Rru_A0571 at 678.701 kb on - strand, within Rru_A0571 at 678.701 kb on - strand, within Rru_A0571 at 678.899 kb on - strand, within Rru_A0571 at 678.899 kb on - strand, within Rru_A0571 at 678.958 kb on + strand at 678.958 kb on + strand at 678.959 kb on - strand at 678.959 kb on - strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.040 kb on + strand at 679.047 kb on + strand at 679.047 kb on + strand at 679.049 kb on + strand at 679.049 kb on + strand at 679.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 676,030 + -1.0 676,031 - -2.0 676,031 - -1.2 676,031 - -1.6 676,168 - -0.6 676,298 + +1.0 676,298 + -1.2 676,368 + -0.5 676,564 + Rru_A0569 0.54 -3.0 676,565 - Rru_A0569 0.54 -1.4 676,566 + Rru_A0569 0.54 +0.7 676,566 + Rru_A0569 0.54 +0.4 676,567 - Rru_A0569 0.54 +0.2 676,588 - Rru_A0569 0.61 -3.4 676,588 - Rru_A0569 0.61 -1.4 676,588 - Rru_A0569 0.61 -1.0 676,695 + -4.0 676,784 + -1.2 676,787 + +2.0 678,248 - +1.4 678,347 + Rru_A0571 0.14 -2.4 678,347 + Rru_A0571 0.14 -0.0 678,347 + Rru_A0571 0.14 -0.9 678,348 - Rru_A0571 0.14 +4.9 678,348 - Rru_A0571 0.14 +3.4 678,426 + Rru_A0571 0.24 +4.5 678,427 - Rru_A0571 0.24 +4.8 678,522 + Rru_A0571 0.37 +3.9 678,522 + Rru_A0571 0.37 +5.1 678,523 - Rru_A0571 0.37 +4.6 678,523 - Rru_A0571 0.37 +4.0 678,700 + Rru_A0571 0.61 +1.0 678,700 + Rru_A0571 0.61 +2.9 678,701 - Rru_A0571 0.61 +4.3 678,701 - Rru_A0571 0.61 +4.6 678,701 - Rru_A0571 0.61 +4.9 678,899 - Rru_A0571 0.88 +5.1 678,899 - Rru_A0571 0.88 +4.2 678,958 + +4.3 678,958 + +4.3 678,959 - +3.8 678,959 - +4.2 679,035 + -1.5 679,035 + +1.0 679,035 + -0.9 679,035 + +0.5 679,035 + +1.1 679,036 - -2.1 679,036 - -0.0 679,036 - -1.0 679,036 - +2.0 679,036 - -1.7 679,040 + +2.0 679,047 + -0.8 679,047 + +1.7 679,049 + -0.0 679,049 + -0.6 679,050 - -1.3
Or see this region's nucleotide sequence