Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0558 and Rru_A0559 are separated by 84 nucleotides Rru_A0559 and Rru_A0560 are separated by 183 nucleotides
Rru_A0558: Rru_A0558 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) (NCBI), at 659,064 to 661,115
_A0558
Rru_A0559: Rru_A0559 - Alpha/beta hydrolase fold (NCBI), at 661,200 to 662,003
_A0559
Rru_A0560: Rru_A0560 - Cytochrome bd ubiquinol oxidase, subunit I (NCBI), at 662,187 to 663,617
_A0560
Position (kb) 661
662
663 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 660.550 kb on + strand, within Rru_A0558 at 660.634 kb on + strand, within Rru_A0558 at 660.680 kb on + strand, within Rru_A0558 at 660.777 kb on - strand, within Rru_A0558 at 660.798 kb on + strand, within Rru_A0558 at 660.832 kb on - strand, within Rru_A0558 at 660.975 kb on - strand at 661.020 kb on + strand at 661.021 kb on - strand at 661.154 kb on + strand at 661.165 kb on + strand at 661.166 kb on - strand at 661.430 kb on + strand, within Rru_A0559 at 661.430 kb on + strand, within Rru_A0559 at 661.430 kb on + strand, within Rru_A0559 at 661.430 kb on + strand, within Rru_A0559 at 661.431 kb on - strand, within Rru_A0559 at 661.431 kb on - strand, within Rru_A0559 at 661.431 kb on - strand, within Rru_A0559 at 661.431 kb on - strand, within Rru_A0559 at 661.431 kb on - strand, within Rru_A0559 at 661.474 kb on + strand, within Rru_A0559 at 661.475 kb on - strand, within Rru_A0559 at 662.058 kb on + strand at 662.058 kb on + strand at 662.059 kb on - strand at 662.150 kb on + strand at 662.150 kb on + strand at 662.151 kb on - strand at 662.151 kb on - strand at 662.154 kb on + strand at 662.154 kb on + strand at 662.155 kb on - strand at 662.155 kb on - strand at 662.293 kb on - strand at 662.352 kb on + strand, within Rru_A0560 at 662.352 kb on + strand, within Rru_A0560 at 662.352 kb on + strand, within Rru_A0560 at 662.353 kb on - strand, within Rru_A0560 at 662.353 kb on - strand, within Rru_A0560 at 662.353 kb on - strand, within Rru_A0560 at 662.353 kb on - strand, within Rru_A0560 at 662.354 kb on + strand, within Rru_A0560 at 662.354 kb on + strand, within Rru_A0560 at 662.354 kb on + strand, within Rru_A0560 at 662.354 kb on + strand, within Rru_A0560 at 662.421 kb on + strand, within Rru_A0560 at 662.421 kb on + strand, within Rru_A0560 at 662.422 kb on - strand, within Rru_A0560 at 662.422 kb on - strand, within Rru_A0560 at 662.422 kb on - strand, within Rru_A0560 at 662.422 kb on - strand, within Rru_A0560 at 662.490 kb on + strand, within Rru_A0560 at 662.490 kb on + strand, within Rru_A0560 at 662.490 kb on + strand, within Rru_A0560 at 662.490 kb on + strand, within Rru_A0560 at 662.491 kb on - strand, within Rru_A0560 at 662.491 kb on - strand, within Rru_A0560 at 662.654 kb on + strand, within Rru_A0560 at 662.654 kb on + strand, within Rru_A0560 at 662.655 kb on - strand, within Rru_A0560 at 662.669 kb on + strand, within Rru_A0560 at 662.750 kb on + strand, within Rru_A0560 at 662.750 kb on + strand, within Rru_A0560 at 662.766 kb on + strand, within Rru_A0560 at 662.767 kb on - strand, within Rru_A0560
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 660,550 + Rru_A0558 0.72 +2.9 660,634 + Rru_A0558 0.77 -2.0 660,680 + Rru_A0558 0.79 -1.7 660,777 - Rru_A0558 0.83 +1.1 660,798 + Rru_A0558 0.85 -2.5 660,832 - Rru_A0558 0.86 +1.0 660,975 - -1.8 661,020 + -0.1 661,021 - -3.2 661,154 + +0.3 661,165 + -1.9 661,166 - -1.1 661,430 + Rru_A0559 0.29 +2.1 661,430 + Rru_A0559 0.29 -2.7 661,430 + Rru_A0559 0.29 +1.2 661,430 + Rru_A0559 0.29 -3.5 661,431 - Rru_A0559 0.29 +0.0 661,431 - Rru_A0559 0.29 -4.1 661,431 - Rru_A0559 0.29 +2.0 661,431 - Rru_A0559 0.29 +1.9 661,431 - Rru_A0559 0.29 -3.6 661,474 + Rru_A0559 0.34 -4.2 661,475 - Rru_A0559 0.34 -3.6 662,058 + -2.1 662,058 + -0.8 662,059 - +2.0 662,150 + +0.0 662,150 + -0.6 662,151 - -1.0 662,151 - -2.7 662,154 + +1.2 662,154 + +0.2 662,155 - +1.0 662,155 - +2.0 662,293 - +0.9 662,352 + Rru_A0560 0.12 -1.0 662,352 + Rru_A0560 0.12 +1.0 662,352 + Rru_A0560 0.12 -1.0 662,353 - Rru_A0560 0.12 -2.0 662,353 - Rru_A0560 0.12 -0.3 662,353 - Rru_A0560 0.12 +2.1 662,353 - Rru_A0560 0.12 -1.6 662,354 + Rru_A0560 0.12 -0.6 662,354 + Rru_A0560 0.12 -0.6 662,354 + Rru_A0560 0.12 -1.4 662,354 + Rru_A0560 0.12 +1.2 662,421 + Rru_A0560 0.16 -2.6 662,421 + Rru_A0560 0.16 -1.3 662,422 - Rru_A0560 0.16 -1.6 662,422 - Rru_A0560 0.16 -1.0 662,422 - Rru_A0560 0.16 -2.3 662,422 - Rru_A0560 0.16 +4.9 662,490 + Rru_A0560 0.21 -0.6 662,490 + Rru_A0560 0.21 -0.6 662,490 + Rru_A0560 0.21 -0.3 662,490 + Rru_A0560 0.21 -1.4 662,491 - Rru_A0560 0.21 +0.0 662,491 - Rru_A0560 0.21 +0.0 662,654 + Rru_A0560 0.33 -1.8 662,654 + Rru_A0560 0.33 +1.1 662,655 - Rru_A0560 0.33 +2.0 662,669 + Rru_A0560 0.34 -1.0 662,750 + Rru_A0560 0.39 -1.7 662,750 + Rru_A0560 0.39 -0.6 662,766 + Rru_A0560 0.40 -1.2 662,767 - Rru_A0560 0.41 +2.0
Or see this region's nucleotide sequence