Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0557 and Rru_A0558 are separated by 14 nucleotides Rru_A0558 and Rru_A0559 are separated by 84 nucleotides
Rru_A0557: Rru_A0557 - Methenyltetrahydrofolate cyclohydrolase (NCBI), at 658,159 to 659,049
_A0557
Rru_A0558: Rru_A0558 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) (NCBI), at 659,064 to 661,115
_A0558
Rru_A0559: Rru_A0559 - Alpha/beta hydrolase fold (NCBI), at 661,200 to 662,003
_A0559
Position (kb) 659
660
661
662 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 659.134 kb on + strand at 659.134 kb on + strand at 659.154 kb on + strand at 659.154 kb on + strand at 659.758 kb on + strand, within Rru_A0558 at 659.758 kb on + strand, within Rru_A0558 at 659.891 kb on - strand, within Rru_A0558 at 659.921 kb on + strand, within Rru_A0558 at 660.049 kb on + strand, within Rru_A0558 at 660.550 kb on + strand, within Rru_A0558 at 660.634 kb on + strand, within Rru_A0558 at 660.680 kb on + strand, within Rru_A0558 at 660.777 kb on - strand, within Rru_A0558 at 660.798 kb on + strand, within Rru_A0558 at 660.832 kb on - strand, within Rru_A0558 at 660.975 kb on - strand at 661.020 kb on + strand at 661.021 kb on - strand at 661.154 kb on + strand at 661.165 kb on + strand at 661.166 kb on - strand at 661.430 kb on + strand, within Rru_A0559 at 661.430 kb on + strand, within Rru_A0559 at 661.430 kb on + strand, within Rru_A0559 at 661.430 kb on + strand, within Rru_A0559 at 661.431 kb on - strand, within Rru_A0559 at 661.431 kb on - strand, within Rru_A0559 at 661.431 kb on - strand, within Rru_A0559 at 661.431 kb on - strand, within Rru_A0559 at 661.431 kb on - strand, within Rru_A0559 at 661.474 kb on + strand, within Rru_A0559 at 661.475 kb on - strand, within Rru_A0559 at 662.058 kb on + strand at 662.058 kb on + strand at 662.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 659,134 + +1.0 659,134 + -0.6 659,154 + -1.7 659,154 + +1.1 659,758 + Rru_A0558 0.34 +0.8 659,758 + Rru_A0558 0.34 -2.5 659,891 - Rru_A0558 0.40 +0.9 659,921 + Rru_A0558 0.42 +2.5 660,049 + Rru_A0558 0.48 -0.1 660,550 + Rru_A0558 0.72 +2.9 660,634 + Rru_A0558 0.77 -2.0 660,680 + Rru_A0558 0.79 -1.7 660,777 - Rru_A0558 0.83 +1.1 660,798 + Rru_A0558 0.85 -2.5 660,832 - Rru_A0558 0.86 +1.0 660,975 - -1.8 661,020 + -0.1 661,021 - -3.2 661,154 + +0.3 661,165 + -1.9 661,166 - -1.1 661,430 + Rru_A0559 0.29 +2.1 661,430 + Rru_A0559 0.29 -2.7 661,430 + Rru_A0559 0.29 +1.2 661,430 + Rru_A0559 0.29 -3.5 661,431 - Rru_A0559 0.29 +0.0 661,431 - Rru_A0559 0.29 -4.1 661,431 - Rru_A0559 0.29 +2.0 661,431 - Rru_A0559 0.29 +1.9 661,431 - Rru_A0559 0.29 -3.6 661,474 + Rru_A0559 0.34 -4.2 661,475 - Rru_A0559 0.34 -3.6 662,058 + -2.1 662,058 + -0.8 662,059 - +2.0
Or see this region's nucleotide sequence