Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0556 and Rru_A0557 are separated by 161 nucleotides Rru_A0557 and Rru_A0558 are separated by 14 nucleotides
Rru_A0556: Rru_A0556 - Formyltetrahydrofolate deformylase (NCBI), at 657,104 to 657,997
_A0556
Rru_A0557: Rru_A0557 - Methenyltetrahydrofolate cyclohydrolase (NCBI), at 658,159 to 659,049
_A0557
Rru_A0558: Rru_A0558 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) (NCBI), at 659,064 to 661,115
_A0558
Position (kb) 658
659
660 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 657.229 kb on - strand, within Rru_A0556 at 657.294 kb on + strand, within Rru_A0556 at 657.294 kb on + strand, within Rru_A0556 at 657.294 kb on + strand, within Rru_A0556 at 657.295 kb on - strand, within Rru_A0556 at 657.295 kb on - strand, within Rru_A0556 at 657.346 kb on - strand, within Rru_A0556 at 657.388 kb on + strand, within Rru_A0556 at 657.388 kb on + strand, within Rru_A0556 at 657.444 kb on + strand, within Rru_A0556 at 657.444 kb on + strand, within Rru_A0556 at 657.654 kb on + strand, within Rru_A0556 at 657.654 kb on + strand, within Rru_A0556 at 657.654 kb on + strand, within Rru_A0556 at 657.654 kb on + strand, within Rru_A0556 at 657.655 kb on - strand, within Rru_A0556 at 657.849 kb on + strand, within Rru_A0556 at 657.849 kb on + strand, within Rru_A0556 at 657.849 kb on + strand, within Rru_A0556 at 657.849 kb on + strand, within Rru_A0556 at 657.850 kb on - strand, within Rru_A0556 at 657.850 kb on - strand, within Rru_A0556 at 657.852 kb on + strand, within Rru_A0556 at 657.853 kb on - strand, within Rru_A0556 at 657.853 kb on - strand, within Rru_A0556 at 657.946 kb on + strand at 657.947 kb on - strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.993 kb on - strand at 657.993 kb on - strand at 658.032 kb on + strand at 658.032 kb on + strand at 658.032 kb on + strand at 659.134 kb on + strand at 659.134 kb on + strand at 659.154 kb on + strand at 659.154 kb on + strand at 659.758 kb on + strand, within Rru_A0558 at 659.758 kb on + strand, within Rru_A0558 at 659.891 kb on - strand, within Rru_A0558 at 659.921 kb on + strand, within Rru_A0558 at 660.049 kb on + strand, within Rru_A0558
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 657,229 - Rru_A0556 0.14 -2.1 657,294 + Rru_A0556 0.21 -1.0 657,294 + Rru_A0556 0.21 -2.1 657,294 + Rru_A0556 0.21 -2.1 657,295 - Rru_A0556 0.21 -3.1 657,295 - Rru_A0556 0.21 +0.0 657,346 - Rru_A0556 0.27 -3.9 657,388 + Rru_A0556 0.32 -1.1 657,388 + Rru_A0556 0.32 -1.1 657,444 + Rru_A0556 0.38 +1.0 657,444 + Rru_A0556 0.38 -2.3 657,654 + Rru_A0556 0.62 +1.0 657,654 + Rru_A0556 0.62 +1.0 657,654 + Rru_A0556 0.62 -1.1 657,654 + Rru_A0556 0.62 -4.1 657,655 - Rru_A0556 0.62 -1.1 657,849 + Rru_A0556 0.83 +0.4 657,849 + Rru_A0556 0.83 -3.4 657,849 + Rru_A0556 0.83 -3.9 657,849 + Rru_A0556 0.83 -0.2 657,850 - Rru_A0556 0.83 -3.0 657,850 - Rru_A0556 0.83 -0.8 657,852 + Rru_A0556 0.84 -4.4 657,853 - Rru_A0556 0.84 -0.8 657,853 - Rru_A0556 0.84 -1.8 657,946 + -2.5 657,947 - -1.0 657,992 + -2.7 657,992 + -1.1 657,992 + +1.0 657,992 + -2.4 657,992 + -2.0 657,992 + -2.4 657,992 + -2.7 657,993 - -2.7 657,993 - -4.4 658,032 + -3.0 658,032 + +0.0 658,032 + +0.1 659,134 + +1.0 659,134 + -0.6 659,154 + -1.7 659,154 + +1.1 659,758 + Rru_A0558 0.34 +0.8 659,758 + Rru_A0558 0.34 -2.5 659,891 - Rru_A0558 0.40 +0.9 659,921 + Rru_A0558 0.42 +2.5 660,049 + Rru_A0558 0.48 -0.1
Or see this region's nucleotide sequence