Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0554 and Rru_A0555 are separated by 14 nucleotides Rru_A0555 and Rru_A0556 are separated by 219 nucleotides Rru_A0556 and Rru_A0557 are separated by 161 nucleotides
Rru_A0554: Rru_A0554 - Rh-like protein/ammonium transporter (NCBI), at 655,212 to 656,531
_A0554
Rru_A0555: Rru_A0555 - Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI), at 656,546 to 656,884
_A0555
Rru_A0556: Rru_A0556 - Formyltetrahydrofolate deformylase (NCBI), at 657,104 to 657,997
_A0556
Rru_A0557: Rru_A0557 - Methenyltetrahydrofolate cyclohydrolase (NCBI), at 658,159 to 659,049
_A0557
Position (kb) 657
658 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 656.604 kb on + strand, within Rru_A0555 at 656.733 kb on + strand, within Rru_A0555 at 656.734 kb on - strand, within Rru_A0555 at 656.734 kb on - strand, within Rru_A0555 at 656.749 kb on - strand, within Rru_A0555 at 657.229 kb on - strand, within Rru_A0556 at 657.294 kb on + strand, within Rru_A0556 at 657.294 kb on + strand, within Rru_A0556 at 657.294 kb on + strand, within Rru_A0556 at 657.295 kb on - strand, within Rru_A0556 at 657.295 kb on - strand, within Rru_A0556 at 657.346 kb on - strand, within Rru_A0556 at 657.388 kb on + strand, within Rru_A0556 at 657.388 kb on + strand, within Rru_A0556 at 657.444 kb on + strand, within Rru_A0556 at 657.444 kb on + strand, within Rru_A0556 at 657.654 kb on + strand, within Rru_A0556 at 657.654 kb on + strand, within Rru_A0556 at 657.654 kb on + strand, within Rru_A0556 at 657.654 kb on + strand, within Rru_A0556 at 657.655 kb on - strand, within Rru_A0556 at 657.849 kb on + strand, within Rru_A0556 at 657.849 kb on + strand, within Rru_A0556 at 657.849 kb on + strand, within Rru_A0556 at 657.849 kb on + strand, within Rru_A0556 at 657.850 kb on - strand, within Rru_A0556 at 657.850 kb on - strand, within Rru_A0556 at 657.852 kb on + strand, within Rru_A0556 at 657.853 kb on - strand, within Rru_A0556 at 657.853 kb on - strand, within Rru_A0556 at 657.946 kb on + strand at 657.947 kb on - strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.993 kb on - strand at 657.993 kb on - strand at 658.032 kb on + strand at 658.032 kb on + strand at 658.032 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 656,604 + Rru_A0555 0.17 -1.9 656,733 + Rru_A0555 0.55 -3.7 656,734 - Rru_A0555 0.55 +1.5 656,734 - Rru_A0555 0.55 +0.8 656,749 - Rru_A0555 0.60 -1.7 657,229 - Rru_A0556 0.14 -2.1 657,294 + Rru_A0556 0.21 -1.0 657,294 + Rru_A0556 0.21 -2.1 657,294 + Rru_A0556 0.21 -2.1 657,295 - Rru_A0556 0.21 -3.1 657,295 - Rru_A0556 0.21 +0.0 657,346 - Rru_A0556 0.27 -3.9 657,388 + Rru_A0556 0.32 -1.1 657,388 + Rru_A0556 0.32 -1.1 657,444 + Rru_A0556 0.38 +1.0 657,444 + Rru_A0556 0.38 -2.3 657,654 + Rru_A0556 0.62 +1.0 657,654 + Rru_A0556 0.62 +1.0 657,654 + Rru_A0556 0.62 -1.1 657,654 + Rru_A0556 0.62 -4.1 657,655 - Rru_A0556 0.62 -1.1 657,849 + Rru_A0556 0.83 +0.4 657,849 + Rru_A0556 0.83 -3.4 657,849 + Rru_A0556 0.83 -3.9 657,849 + Rru_A0556 0.83 -0.2 657,850 - Rru_A0556 0.83 -3.0 657,850 - Rru_A0556 0.83 -0.8 657,852 + Rru_A0556 0.84 -4.4 657,853 - Rru_A0556 0.84 -0.8 657,853 - Rru_A0556 0.84 -1.8 657,946 + -2.5 657,947 - -1.0 657,992 + -2.7 657,992 + -1.1 657,992 + +1.0 657,992 + -2.4 657,992 + -2.0 657,992 + -2.4 657,992 + -2.7 657,993 - -2.7 657,993 - -4.4 658,032 + -3.0 658,032 + +0.0 658,032 + +0.1
Or see this region's nucleotide sequence