Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0548 and Rru_A0549 are separated by 256 nucleotides Rru_A0549 and Rru_A0550 are separated by 142 nucleotides
Rru_A0548: Rru_A0548 - Flagellar hook-length control protein (NCBI), at 646,052 to 647,875
_A0548
Rru_A0549: Rru_A0549 - hypothetical protein (NCBI), at 648,132 to 649,259
_A0549
Rru_A0550: Rru_A0550 - TPR repeat (NCBI), at 649,402 to 651,189
_A0550
Position (kb) 648
649
650 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 647.763 kb on - strand at 648.203 kb on - strand at 648.203 kb on - strand at 648.203 kb on - strand at 648.686 kb on + strand, within Rru_A0549 at 648.686 kb on + strand, within Rru_A0549 at 648.686 kb on + strand, within Rru_A0549 at 648.686 kb on + strand, within Rru_A0549 at 648.687 kb on - strand, within Rru_A0549 at 648.687 kb on - strand, within Rru_A0549 at 648.687 kb on - strand, within Rru_A0549 at 648.687 kb on - strand, within Rru_A0549 at 648.688 kb on + strand, within Rru_A0549 at 648.688 kb on + strand, within Rru_A0549 at 648.688 kb on + strand, within Rru_A0549 at 648.689 kb on - strand, within Rru_A0549 at 648.689 kb on - strand, within Rru_A0549 at 648.689 kb on - strand, within Rru_A0549 at 648.689 kb on - strand, within Rru_A0549 at 648.697 kb on + strand, within Rru_A0549 at 648.698 kb on - strand, within Rru_A0549 at 648.778 kb on + strand, within Rru_A0549 at 648.778 kb on + strand, within Rru_A0549 at 648.823 kb on + strand, within Rru_A0549 at 648.824 kb on - strand, within Rru_A0549 at 648.878 kb on + strand, within Rru_A0549 at 648.878 kb on + strand, within Rru_A0549 at 648.878 kb on + strand, within Rru_A0549 at 648.878 kb on + strand, within Rru_A0549 at 648.878 kb on + strand, within Rru_A0549 at 648.879 kb on - strand, within Rru_A0549 at 648.879 kb on - strand, within Rru_A0549 at 648.879 kb on - strand, within Rru_A0549 at 648.879 kb on - strand, within Rru_A0549 at 648.879 kb on - strand, within Rru_A0549 at 648.879 kb on - strand, within Rru_A0549 at 648.880 kb on + strand, within Rru_A0549 at 648.880 kb on + strand, within Rru_A0549 at 648.880 kb on + strand, within Rru_A0549 at 648.880 kb on + strand, within Rru_A0549 at 648.960 kb on - strand, within Rru_A0549 at 648.960 kb on - strand, within Rru_A0549 at 648.960 kb on - strand, within Rru_A0549 at 648.961 kb on + strand, within Rru_A0549 at 648.961 kb on + strand, within Rru_A0549 at 648.961 kb on + strand, within Rru_A0549 at 648.962 kb on - strand, within Rru_A0549 at 649.043 kb on + strand, within Rru_A0549 at 649.043 kb on + strand, within Rru_A0549 at 649.043 kb on + strand, within Rru_A0549 at 649.044 kb on - strand, within Rru_A0549 at 649.213 kb on + strand at 649.213 kb on + strand at 649.213 kb on + strand at 649.214 kb on - strand at 649.214 kb on - strand at 649.227 kb on + strand at 649.227 kb on + strand at 649.228 kb on - strand at 649.228 kb on - strand at 649.315 kb on - strand at 649.372 kb on - strand at 649.373 kb on + strand at 649.374 kb on - strand at 649.544 kb on + strand at 649.544 kb on + strand at 649.544 kb on + strand at 649.544 kb on + strand at 649.544 kb on + strand at 649.544 kb on + strand at 649.544 kb on + strand at 649.545 kb on - strand at 649.545 kb on - strand at 649.545 kb on - strand at 649.545 kb on - strand at 649.545 kb on - strand at 649.720 kb on + strand, within Rru_A0550 at 649.720 kb on + strand, within Rru_A0550 at 649.721 kb on - strand, within Rru_A0550 at 649.721 kb on - strand, within Rru_A0550 at 649.933 kb on + strand, within Rru_A0550
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 647,763 - -1.9 648,203 - -2.4 648,203 - -0.2 648,203 - -1.2 648,686 + Rru_A0549 0.49 +2.3 648,686 + Rru_A0549 0.49 -2.2 648,686 + Rru_A0549 0.49 -0.5 648,686 + Rru_A0549 0.49 +1.7 648,687 - Rru_A0549 0.49 -2.3 648,687 - Rru_A0549 0.49 +0.2 648,687 - Rru_A0549 0.49 -0.5 648,687 - Rru_A0549 0.49 -1.7 648,688 + Rru_A0549 0.49 -2.1 648,688 + Rru_A0549 0.49 +0.3 648,688 + Rru_A0549 0.49 +0.9 648,689 - Rru_A0549 0.49 +0.7 648,689 - Rru_A0549 0.49 +2.8 648,689 - Rru_A0549 0.49 +0.0 648,689 - Rru_A0549 0.49 -0.3 648,697 + Rru_A0549 0.50 -0.6 648,698 - Rru_A0549 0.50 -0.6 648,778 + Rru_A0549 0.57 +1.4 648,778 + Rru_A0549 0.57 +0.3 648,823 + Rru_A0549 0.61 +1.5 648,824 - Rru_A0549 0.61 -2.5 648,878 + Rru_A0549 0.66 -2.7 648,878 + Rru_A0549 0.66 +2.6 648,878 + Rru_A0549 0.66 -3.3 648,878 + Rru_A0549 0.66 -1.6 648,878 + Rru_A0549 0.66 +0.6 648,879 - Rru_A0549 0.66 -3.3 648,879 - Rru_A0549 0.66 -0.3 648,879 - Rru_A0549 0.66 +0.4 648,879 - Rru_A0549 0.66 +0.5 648,879 - Rru_A0549 0.66 +1.0 648,879 - Rru_A0549 0.66 +0.6 648,880 + Rru_A0549 0.66 -2.2 648,880 + Rru_A0549 0.66 -1.6 648,880 + Rru_A0549 0.66 +0.2 648,880 + Rru_A0549 0.66 -1.7 648,960 - Rru_A0549 0.73 -0.5 648,960 - Rru_A0549 0.73 +1.5 648,960 - Rru_A0549 0.73 -0.2 648,961 + Rru_A0549 0.73 -0.8 648,961 + Rru_A0549 0.73 -1.4 648,961 + Rru_A0549 0.73 +0.8 648,962 - Rru_A0549 0.74 +1.0 649,043 + Rru_A0549 0.81 -1.1 649,043 + Rru_A0549 0.81 +4.2 649,043 + Rru_A0549 0.81 -1.8 649,044 - Rru_A0549 0.81 +0.4 649,213 + -1.4 649,213 + +0.9 649,213 + -0.8 649,214 - +1.2 649,214 - +0.2 649,227 + -0.0 649,227 + -1.6 649,228 - +2.5 649,228 - -0.3 649,315 - +1.2 649,372 - +0.8 649,373 + -1.9 649,374 - -0.6 649,544 + -2.0 649,544 + +1.3 649,544 + -2.4 649,544 + -0.8 649,544 + -1.4 649,544 + -0.4 649,544 + -1.6 649,545 - +1.5 649,545 - +0.4 649,545 - -3.7 649,545 - -0.5 649,545 - -1.8 649,720 + Rru_A0550 0.18 -1.0 649,720 + Rru_A0550 0.18 -3.6 649,721 - Rru_A0550 0.18 -1.4 649,721 - Rru_A0550 0.18 -2.6 649,933 + Rru_A0550 0.30 +0.7
Or see this region's nucleotide sequence