Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0544 and Rru_A0545 are separated by 60 nucleotides Rru_A0545 and Rru_A0546 are separated by 585 nucleotides
Rru_A0544: Rru_A0544 - Flagellar motor switch protein FliG (NCBI), at 639,784 to 640,803
_A0544
Rru_A0545: Rru_A0545 - Flagellar FliF M-ring protein (NCBI), at 640,864 to 642,519
_A0545
Rru_A0546: Rru_A0546 - hypothetical protein (NCBI), at 643,105 to 645,090
_A0546
Position (kb) 640
641
642
643 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 640.427 kb on + strand, within Rru_A0544 at 640.427 kb on + strand, within Rru_A0544 at 640.427 kb on + strand, within Rru_A0544 at 640.565 kb on + strand, within Rru_A0544 at 640.566 kb on - strand, within Rru_A0544 at 640.566 kb on - strand, within Rru_A0544 at 640.566 kb on - strand, within Rru_A0544 at 640.566 kb on - strand, within Rru_A0544 at 640.566 kb on - strand, within Rru_A0544 at 640.749 kb on + strand at 640.749 kb on + strand at 640.749 kb on + strand at 640.750 kb on - strand at 640.750 kb on - strand at 640.750 kb on - strand at 640.750 kb on - strand at 640.750 kb on - strand at 640.750 kb on - strand at 640.750 kb on - strand at 640.750 kb on - strand at 640.750 kb on - strand at 640.781 kb on + strand at 640.782 kb on - strand at 640.877 kb on + strand at 641.343 kb on - strand, within Rru_A0545 at 641.439 kb on + strand, within Rru_A0545 at 641.522 kb on + strand, within Rru_A0545 at 641.522 kb on + strand, within Rru_A0545 at 641.522 kb on + strand, within Rru_A0545 at 641.523 kb on - strand, within Rru_A0545 at 641.523 kb on - strand, within Rru_A0545 at 641.721 kb on + strand, within Rru_A0545 at 641.721 kb on + strand, within Rru_A0545 at 641.721 kb on + strand, within Rru_A0545 at 641.722 kb on - strand, within Rru_A0545 at 641.722 kb on - strand, within Rru_A0545 at 642.150 kb on + strand, within Rru_A0545 at 642.150 kb on + strand, within Rru_A0545 at 642.150 kb on + strand, within Rru_A0545 at 642.150 kb on + strand, within Rru_A0545 at 642.151 kb on - strand, within Rru_A0545 at 642.151 kb on - strand, within Rru_A0545 at 642.156 kb on + strand, within Rru_A0545 at 642.156 kb on + strand, within Rru_A0545 at 642.156 kb on + strand, within Rru_A0545 at 642.156 kb on + strand, within Rru_A0545 at 642.156 kb on + strand, within Rru_A0545 at 642.156 kb on + strand, within Rru_A0545 at 642.156 kb on + strand, within Rru_A0545 at 642.156 kb on + strand, within Rru_A0545 at 642.156 kb on + strand, within Rru_A0545 at 642.266 kb on - strand, within Rru_A0545 at 642.425 kb on + strand at 642.426 kb on - strand at 642.603 kb on - strand at 642.603 kb on - strand at 642.641 kb on - strand at 642.641 kb on - strand at 642.667 kb on + strand at 642.667 kb on + strand at 642.946 kb on + strand at 643.175 kb on + strand at 643.197 kb on + strand at 643.197 kb on + strand at 643.197 kb on + strand at 643.198 kb on - strand at 643.294 kb on + strand at 643.295 kb on - strand at 643.455 kb on - strand, within Rru_A0546 at 643.467 kb on + strand, within Rru_A0546 at 643.467 kb on + strand, within Rru_A0546 at 643.468 kb on - strand, within Rru_A0546 at 643.487 kb on + strand, within Rru_A0546 at 643.488 kb on - strand, within Rru_A0546 at 643.488 kb on - strand, within Rru_A0546 at 643.499 kb on + strand, within Rru_A0546
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 640,427 + Rru_A0544 0.63 +1.1 640,427 + Rru_A0544 0.63 -1.0 640,427 + Rru_A0544 0.63 +1.5 640,565 + Rru_A0544 0.77 +0.0 640,566 - Rru_A0544 0.77 -4.0 640,566 - Rru_A0544 0.77 +0.6 640,566 - Rru_A0544 0.77 +1.7 640,566 - Rru_A0544 0.77 -0.4 640,566 - Rru_A0544 0.77 -1.4 640,749 + -0.2 640,749 + +2.4 640,749 + +0.2 640,750 - -1.7 640,750 - +1.0 640,750 - +1.2 640,750 - +1.5 640,750 - +2.0 640,750 - +0.8 640,750 - +0.9 640,750 - +0.6 640,750 - +2.8 640,781 + -1.1 640,782 - -1.7 640,877 + +2.0 641,343 - Rru_A0545 0.29 +0.5 641,439 + Rru_A0545 0.35 +2.8 641,522 + Rru_A0545 0.40 -1.8 641,522 + Rru_A0545 0.40 -0.1 641,522 + Rru_A0545 0.40 -1.2 641,523 - Rru_A0545 0.40 -1.8 641,523 - Rru_A0545 0.40 +0.1 641,721 + Rru_A0545 0.52 +0.2 641,721 + Rru_A0545 0.52 -0.3 641,721 + Rru_A0545 0.52 +1.3 641,722 - Rru_A0545 0.52 -1.1 641,722 - Rru_A0545 0.52 +1.3 642,150 + Rru_A0545 0.78 +0.4 642,150 + Rru_A0545 0.78 +0.2 642,150 + Rru_A0545 0.78 +0.5 642,150 + Rru_A0545 0.78 -0.8 642,151 - Rru_A0545 0.78 +1.8 642,151 - Rru_A0545 0.78 -0.8 642,156 + Rru_A0545 0.78 +0.7 642,156 + Rru_A0545 0.78 -1.9 642,156 + Rru_A0545 0.78 -2.9 642,156 + Rru_A0545 0.78 +2.1 642,156 + Rru_A0545 0.78 +0.3 642,156 + Rru_A0545 0.78 -2.8 642,156 + Rru_A0545 0.78 -1.4 642,156 + Rru_A0545 0.78 -0.4 642,156 + Rru_A0545 0.78 +1.8 642,266 - Rru_A0545 0.85 -3.8 642,425 + +2.0 642,426 - -0.7 642,603 - +1.0 642,603 - +0.6 642,641 - -1.1 642,641 - -1.3 642,667 + +0.2 642,667 + +0.5 642,946 + -0.3 643,175 + +0.9 643,197 + +0.6 643,197 + -1.3 643,197 + -0.9 643,198 - +2.0 643,294 + -0.3 643,295 - -1.1 643,455 - Rru_A0546 0.18 +0.8 643,467 + Rru_A0546 0.18 +2.0 643,467 + Rru_A0546 0.18 -1.1 643,468 - Rru_A0546 0.18 -0.6 643,487 + Rru_A0546 0.19 -2.7 643,488 - Rru_A0546 0.19 +1.3 643,488 - Rru_A0546 0.19 +1.9 643,499 + Rru_A0546 0.20 -1.3
Or see this region's nucleotide sequence