Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0537 and Rru_A0538 are separated by 4 nucleotides Rru_A0538 and Rru_A0539 are separated by 156 nucleotides Rru_A0539 and Rru_A0540 are separated by 25 nucleotides
Rru_A0537: Rru_A0537 - Protein of unknown function DUF955 (NCBI), at 632,163 to 633,422
_A0537
Rru_A0538: Rru_A0538 - hypothetical protein (NCBI), at 633,427 to 633,912
_A0538
Rru_A0539: Rru_A0539 - Flagellar biosynthesis protein FlhA (NCBI), at 634,069 to 636,231
_A0539
Rru_A0540: Rru_A0540 - Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI), at 636,257 to 637,594
_A0540
Position (kb) 634
635
636
637 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 633.111 kb on - strand, within Rru_A0537 at 633.235 kb on - strand, within Rru_A0537 at 633.475 kb on + strand at 633.476 kb on - strand, within Rru_A0538 at 633.688 kb on + strand, within Rru_A0538 at 633.689 kb on - strand, within Rru_A0538 at 633.708 kb on + strand, within Rru_A0538 at 633.709 kb on - strand, within Rru_A0538 at 633.865 kb on - strand at 633.968 kb on + strand at 633.969 kb on - strand at 634.013 kb on - strand at 634.169 kb on + strand at 634.169 kb on + strand at 634.170 kb on - strand at 634.656 kb on + strand, within Rru_A0539 at 634.656 kb on + strand, within Rru_A0539 at 634.656 kb on + strand, within Rru_A0539 at 634.656 kb on + strand, within Rru_A0539 at 634.657 kb on - strand, within Rru_A0539 at 634.680 kb on + strand, within Rru_A0539 at 634.681 kb on - strand, within Rru_A0539 at 634.716 kb on + strand, within Rru_A0539 at 634.717 kb on - strand, within Rru_A0539 at 634.719 kb on - strand, within Rru_A0539 at 634.892 kb on + strand, within Rru_A0539 at 634.892 kb on + strand, within Rru_A0539 at 634.893 kb on - strand, within Rru_A0539 at 634.893 kb on - strand, within Rru_A0539 at 634.893 kb on - strand, within Rru_A0539 at 634.893 kb on - strand, within Rru_A0539 at 634.901 kb on + strand, within Rru_A0539 at 634.901 kb on + strand, within Rru_A0539 at 634.901 kb on + strand, within Rru_A0539 at 634.905 kb on + strand, within Rru_A0539 at 634.905 kb on + strand, within Rru_A0539 at 634.905 kb on + strand, within Rru_A0539 at 634.906 kb on - strand, within Rru_A0539 at 634.906 kb on - strand, within Rru_A0539 at 634.906 kb on - strand, within Rru_A0539 at 635.049 kb on - strand, within Rru_A0539 at 635.049 kb on - strand, within Rru_A0539 at 635.181 kb on + strand, within Rru_A0539 at 635.438 kb on + strand, within Rru_A0539 at 635.438 kb on + strand, within Rru_A0539 at 635.438 kb on + strand, within Rru_A0539 at 635.439 kb on - strand, within Rru_A0539 at 635.439 kb on - strand, within Rru_A0539 at 635.439 kb on - strand, within Rru_A0539 at 635.439 kb on - strand, within Rru_A0539 at 635.439 kb on - strand, within Rru_A0539 at 636.238 kb on - strand at 636.315 kb on + strand at 636.316 kb on - strand at 636.530 kb on - strand, within Rru_A0540 at 636.805 kb on + strand, within Rru_A0540 at 637.228 kb on + strand, within Rru_A0540 at 637.228 kb on + strand, within Rru_A0540 at 637.229 kb on - strand, within Rru_A0540 at 637.229 kb on - strand, within Rru_A0540 at 637.230 kb on + strand, within Rru_A0540 at 637.230 kb on + strand, within Rru_A0540 at 637.231 kb on - strand, within Rru_A0540
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 633,111 - Rru_A0537 0.75 -1.7 633,235 - Rru_A0537 0.85 +1.2 633,475 + +0.0 633,476 - Rru_A0538 0.10 -0.9 633,688 + Rru_A0538 0.54 +0.0 633,689 - Rru_A0538 0.54 +2.3 633,708 + Rru_A0538 0.58 -2.5 633,709 - Rru_A0538 0.58 +1.6 633,865 - -0.1 633,968 + -0.6 633,969 - +0.8 634,013 - -0.1 634,169 + +1.2 634,169 + +0.4 634,170 - -2.8 634,656 + Rru_A0539 0.27 -2.9 634,656 + Rru_A0539 0.27 -0.8 634,656 + Rru_A0539 0.27 -1.2 634,656 + Rru_A0539 0.27 -1.4 634,657 - Rru_A0539 0.27 +1.6 634,680 + Rru_A0539 0.28 +2.7 634,681 - Rru_A0539 0.28 -0.7 634,716 + Rru_A0539 0.30 +0.4 634,717 - Rru_A0539 0.30 -0.6 634,719 - Rru_A0539 0.30 +0.3 634,892 + Rru_A0539 0.38 +0.2 634,892 + Rru_A0539 0.38 -2.6 634,893 - Rru_A0539 0.38 +0.8 634,893 - Rru_A0539 0.38 +2.0 634,893 - Rru_A0539 0.38 +0.5 634,893 - Rru_A0539 0.38 +1.5 634,901 + Rru_A0539 0.38 +0.3 634,901 + Rru_A0539 0.38 +0.4 634,901 + Rru_A0539 0.38 -2.1 634,905 + Rru_A0539 0.39 +3.6 634,905 + Rru_A0539 0.39 -1.2 634,905 + Rru_A0539 0.39 -0.6 634,906 - Rru_A0539 0.39 +2.0 634,906 - Rru_A0539 0.39 -0.8 634,906 - Rru_A0539 0.39 +2.0 635,049 - Rru_A0539 0.45 +2.0 635,049 - Rru_A0539 0.45 -1.9 635,181 + Rru_A0539 0.51 -1.3 635,438 + Rru_A0539 0.63 -0.2 635,438 + Rru_A0539 0.63 +1.3 635,438 + Rru_A0539 0.63 +1.8 635,439 - Rru_A0539 0.63 +0.9 635,439 - Rru_A0539 0.63 +1.0 635,439 - Rru_A0539 0.63 +0.2 635,439 - Rru_A0539 0.63 +0.1 635,439 - Rru_A0539 0.63 -0.3 636,238 - +0.4 636,315 + -0.2 636,316 - +2.2 636,530 - Rru_A0540 0.20 +1.5 636,805 + Rru_A0540 0.41 -0.6 637,228 + Rru_A0540 0.73 -1.3 637,228 + Rru_A0540 0.73 +0.4 637,229 - Rru_A0540 0.73 -2.2 637,229 - Rru_A0540 0.73 -0.7 637,230 + Rru_A0540 0.73 -2.1 637,230 + Rru_A0540 0.73 -1.2 637,231 - Rru_A0540 0.73 -0.7
Or see this region's nucleotide sequence