Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0530 and Rru_A0531 are separated by 215 nucleotides Rru_A0531 and Rru_A0532 are separated by 92 nucleotides Rru_A0532 and Rru_A0533 are separated by 47 nucleotides
Rru_A0530: Rru_A0530 - Ferredoxin--NADP+ reductase (NCBI), at 624,436 to 625,209
_A0530
Rru_A0531: Rru_A0531 - hypothetical protein (NCBI), at 625,425 to 627,191
_A0531
Rru_A0532: Rru_A0532 - Cobyrinic acid a,c-diamide synthase (NCBI), at 627,284 to 628,057
_A0532
Rru_A0533: Rru_A0533 - GTP-binding signal recognition particle SRP54, G-domain (NCBI), at 628,105 to 629,211
_A0533
Position (kb) 625
626
627
628 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 624.437 kb on + strand at 624.437 kb on + strand at 625.290 kb on - strand at 625.290 kb on - strand at 625.300 kb on - strand at 625.343 kb on - strand at 625.343 kb on - strand at 625.354 kb on + strand at 625.355 kb on - strand at 625.364 kb on - strand at 625.642 kb on + strand, within Rru_A0531 at 625.868 kb on + strand, within Rru_A0531 at 627.285 kb on + strand at 627.286 kb on - strand at 627.286 kb on - strand at 627.286 kb on - strand at 627.286 kb on - strand at 627.469 kb on - strand, within Rru_A0532 at 627.469 kb on - strand, within Rru_A0532 at 627.564 kb on + strand, within Rru_A0532 at 627.564 kb on + strand, within Rru_A0532 at 627.564 kb on + strand, within Rru_A0532 at 627.565 kb on - strand, within Rru_A0532 at 627.565 kb on - strand, within Rru_A0532 at 627.565 kb on - strand, within Rru_A0532 at 627.647 kb on - strand, within Rru_A0532 at 627.684 kb on + strand, within Rru_A0532 at 627.684 kb on + strand, within Rru_A0532 at 628.015 kb on + strand at 628.015 kb on + strand at 628.015 kb on + strand at 628.016 kb on - strand at 628.016 kb on - strand at 628.121 kb on + strand at 628.128 kb on + strand at 628.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 624,437 + +1.2 624,437 + +2.6 625,290 - +2.4 625,290 - -0.8 625,300 - +0.1 625,343 - -1.8 625,343 - -1.4 625,354 + +1.5 625,355 - -1.7 625,364 - -1.1 625,642 + Rru_A0531 0.12 +0.5 625,868 + Rru_A0531 0.25 +0.4 627,285 + -0.1 627,286 - +2.7 627,286 - -0.2 627,286 - -0.3 627,286 - +1.0 627,469 - Rru_A0532 0.24 -2.8 627,469 - Rru_A0532 0.24 -1.2 627,564 + Rru_A0532 0.36 -0.3 627,564 + Rru_A0532 0.36 +3.8 627,564 + Rru_A0532 0.36 +0.7 627,565 - Rru_A0532 0.36 -0.6 627,565 - Rru_A0532 0.36 +2.5 627,565 - Rru_A0532 0.36 +3.0 627,647 - Rru_A0532 0.47 +1.7 627,684 + Rru_A0532 0.52 +1.2 627,684 + Rru_A0532 0.52 -1.9 628,015 + +2.4 628,015 + -1.8 628,015 + +0.0 628,016 - -0.3 628,016 - -0.3 628,121 + +0.3 628,128 + +0.4 628,129 - +3.4
Or see this region's nucleotide sequence