Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0528 and Rru_A0529 are separated by 10 nucleotides Rru_A0529 and Rru_A0530 are separated by 126 nucleotides Rru_A0530 and Rru_A0531 are separated by 215 nucleotides
Rru_A0528: Rru_A0528 - Heat shock protein DnaJ-like (NCBI), at 622,611 to 623,867
_A0528
Rru_A0529: Rru_A0529 - hypothetical protein (NCBI), at 623,878 to 624,309
_A0529
Rru_A0530: Rru_A0530 - Ferredoxin--NADP+ reductase (NCBI), at 624,436 to 625,209
_A0530
Rru_A0531: Rru_A0531 - hypothetical protein (NCBI), at 625,425 to 627,191
_A0531
Position (kb) 624
625
626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 623.530 kb on + strand, within Rru_A0528 at 623.530 kb on + strand, within Rru_A0528 at 623.530 kb on + strand, within Rru_A0528 at 623.531 kb on - strand, within Rru_A0528 at 623.659 kb on + strand, within Rru_A0528 at 623.659 kb on + strand, within Rru_A0528 at 623.660 kb on - strand, within Rru_A0528 at 623.695 kb on + strand, within Rru_A0528 at 623.695 kb on + strand, within Rru_A0528 at 623.696 kb on - strand, within Rru_A0528 at 623.696 kb on - strand, within Rru_A0528 at 623.696 kb on - strand, within Rru_A0528 at 623.834 kb on - strand at 623.834 kb on - strand at 623.836 kb on + strand at 623.836 kb on + strand at 623.837 kb on - strand at 623.837 kb on - strand at 623.837 kb on - strand at 623.837 kb on - strand at 623.837 kb on - strand at 623.837 kb on - strand at 623.862 kb on - strand at 624.127 kb on - strand, within Rru_A0529 at 624.128 kb on + strand, within Rru_A0529 at 624.128 kb on + strand, within Rru_A0529 at 624.208 kb on + strand, within Rru_A0529 at 624.208 kb on + strand, within Rru_A0529 at 624.208 kb on + strand, within Rru_A0529 at 624.245 kb on + strand, within Rru_A0529 at 624.245 kb on + strand, within Rru_A0529 at 624.245 kb on + strand, within Rru_A0529 at 624.245 kb on + strand, within Rru_A0529 at 624.245 kb on + strand, within Rru_A0529 at 624.246 kb on - strand, within Rru_A0529 at 624.246 kb on - strand, within Rru_A0529 at 624.246 kb on - strand, within Rru_A0529 at 624.246 kb on - strand, within Rru_A0529 at 624.246 kb on - strand, within Rru_A0529 at 624.246 kb on - strand, within Rru_A0529 at 624.246 kb on - strand, within Rru_A0529 at 624.246 kb on - strand, within Rru_A0529 at 624.340 kb on + strand at 624.348 kb on + strand at 624.348 kb on + strand at 624.349 kb on - strand at 624.349 kb on - strand at 624.388 kb on - strand at 624.437 kb on + strand at 624.437 kb on + strand at 625.290 kb on - strand at 625.290 kb on - strand at 625.300 kb on - strand at 625.343 kb on - strand at 625.343 kb on - strand at 625.354 kb on + strand at 625.355 kb on - strand at 625.364 kb on - strand at 625.642 kb on + strand, within Rru_A0531 at 625.868 kb on + strand, within Rru_A0531
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 623,530 + Rru_A0528 0.73 -0.4 623,530 + Rru_A0528 0.73 +0.2 623,530 + Rru_A0528 0.73 +1.5 623,531 - Rru_A0528 0.73 +0.0 623,659 + Rru_A0528 0.83 -0.8 623,659 + Rru_A0528 0.83 -2.3 623,660 - Rru_A0528 0.83 -1.1 623,695 + Rru_A0528 0.86 -1.0 623,695 + Rru_A0528 0.86 -0.5 623,696 - Rru_A0528 0.86 -0.3 623,696 - Rru_A0528 0.86 +0.6 623,696 - Rru_A0528 0.86 -1.1 623,834 - +0.3 623,834 - +1.8 623,836 + +0.4 623,836 + -0.4 623,837 - +0.7 623,837 - +0.0 623,837 - +2.0 623,837 - +1.4 623,837 - +2.0 623,837 - -1.3 623,862 - +0.1 624,127 - Rru_A0529 0.58 +1.2 624,128 + Rru_A0529 0.58 -3.4 624,128 + Rru_A0529 0.58 +0.2 624,208 + Rru_A0529 0.76 -3.1 624,208 + Rru_A0529 0.76 +2.0 624,208 + Rru_A0529 0.76 +0.5 624,245 + Rru_A0529 0.85 -0.5 624,245 + Rru_A0529 0.85 -0.7 624,245 + Rru_A0529 0.85 +2.7 624,245 + Rru_A0529 0.85 -0.2 624,245 + Rru_A0529 0.85 +2.8 624,246 - Rru_A0529 0.85 -1.6 624,246 - Rru_A0529 0.85 +3.8 624,246 - Rru_A0529 0.85 -0.3 624,246 - Rru_A0529 0.85 +0.5 624,246 - Rru_A0529 0.85 +2.0 624,246 - Rru_A0529 0.85 +0.1 624,246 - Rru_A0529 0.85 -2.0 624,246 - Rru_A0529 0.85 -1.4 624,340 + +0.0 624,348 + -0.8 624,348 + +2.0 624,349 - +2.2 624,349 - -2.1 624,388 - -2.1 624,437 + +1.2 624,437 + +2.6 625,290 - +2.4 625,290 - -0.8 625,300 - +0.1 625,343 - -1.8 625,343 - -1.4 625,354 + +1.5 625,355 - -1.7 625,364 - -1.1 625,642 + Rru_A0531 0.12 +0.5 625,868 + Rru_A0531 0.25 +0.4
Or see this region's nucleotide sequence