Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0526 and Rru_A0527 are separated by 98 nucleotides Rru_A0527 and Rru_A0528 overlap by 50 nucleotides
Rru_A0526: Rru_A0526 - ATPase FliI/YscN (NCBI), at 620,682 to 622,109
_A0526
Rru_A0527: Rru_A0527 - hypothetical protein (NCBI), at 622,208 to 622,660
_A0527
Rru_A0528: Rru_A0528 - Heat shock protein DnaJ-like (NCBI), at 622,611 to 623,867
_A0528
Position (kb) 622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 621.390 kb on + strand, within Rru_A0526 at 621.391 kb on - strand, within Rru_A0526 at 621.391 kb on - strand, within Rru_A0526 at 621.391 kb on - strand, within Rru_A0526 at 621.391 kb on - strand, within Rru_A0526 at 621.392 kb on + strand, within Rru_A0526 at 621.392 kb on + strand, within Rru_A0526 at 621.392 kb on + strand, within Rru_A0526 at 621.392 kb on + strand, within Rru_A0526 at 621.392 kb on + strand, within Rru_A0526 at 621.392 kb on + strand, within Rru_A0526 at 621.392 kb on + strand, within Rru_A0526 at 621.392 kb on + strand, within Rru_A0526 at 621.393 kb on - strand, within Rru_A0526 at 621.393 kb on - strand, within Rru_A0526 at 621.393 kb on - strand, within Rru_A0526 at 621.393 kb on - strand, within Rru_A0526 at 621.393 kb on - strand, within Rru_A0526 at 621.393 kb on - strand, within Rru_A0526 at 621.393 kb on - strand, within Rru_A0526 at 621.393 kb on - strand, within Rru_A0526 at 621.393 kb on - strand, within Rru_A0526 at 621.393 kb on - strand, within Rru_A0526 at 621.414 kb on + strand, within Rru_A0526 at 621.414 kb on + strand, within Rru_A0526 at 621.415 kb on - strand, within Rru_A0526 at 621.529 kb on - strand, within Rru_A0526 at 621.531 kb on - strand, within Rru_A0526 at 621.689 kb on + strand, within Rru_A0526 at 621.689 kb on + strand, within Rru_A0526 at 621.690 kb on - strand, within Rru_A0526 at 621.740 kb on + strand, within Rru_A0526 at 621.741 kb on - strand, within Rru_A0526 at 621.776 kb on + strand, within Rru_A0526 at 621.777 kb on - strand, within Rru_A0526 at 621.831 kb on + strand, within Rru_A0526 at 621.831 kb on + strand, within Rru_A0526 at 621.832 kb on - strand, within Rru_A0526 at 621.840 kb on - strand, within Rru_A0526 at 621.975 kb on + strand at 622.107 kb on + strand at 622.108 kb on - strand at 622.129 kb on + strand at 622.130 kb on - strand at 622.130 kb on - strand at 622.160 kb on + strand at 622.160 kb on + strand at 622.243 kb on + strand at 622.421 kb on + strand, within Rru_A0527 at 622.421 kb on + strand, within Rru_A0527 at 622.422 kb on - strand, within Rru_A0527 at 622.422 kb on - strand, within Rru_A0527 at 622.894 kb on + strand, within Rru_A0528 at 622.895 kb on - strand, within Rru_A0528 at 622.895 kb on - strand, within Rru_A0528 at 622.943 kb on + strand, within Rru_A0528 at 622.943 kb on + strand, within Rru_A0528 at 622.943 kb on + strand, within Rru_A0528 at 622.943 kb on + strand, within Rru_A0528 at 622.943 kb on + strand, within Rru_A0528 at 622.944 kb on - strand, within Rru_A0528 at 623.530 kb on + strand, within Rru_A0528 at 623.530 kb on + strand, within Rru_A0528 at 623.530 kb on + strand, within Rru_A0528 at 623.531 kb on - strand, within Rru_A0528 at 623.659 kb on + strand, within Rru_A0528 at 623.659 kb on + strand, within Rru_A0528 at 623.660 kb on - strand, within Rru_A0528
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 621,390 + Rru_A0526 0.50 -0.1 621,391 - Rru_A0526 0.50 +2.0 621,391 - Rru_A0526 0.50 -2.5 621,391 - Rru_A0526 0.50 -0.4 621,391 - Rru_A0526 0.50 -0.5 621,392 + Rru_A0526 0.50 +1.7 621,392 + Rru_A0526 0.50 +2.9 621,392 + Rru_A0526 0.50 -0.0 621,392 + Rru_A0526 0.50 +1.4 621,392 + Rru_A0526 0.50 +0.4 621,392 + Rru_A0526 0.50 -0.0 621,392 + Rru_A0526 0.50 +0.3 621,392 + Rru_A0526 0.50 -0.1 621,393 - Rru_A0526 0.50 -1.4 621,393 - Rru_A0526 0.50 -1.0 621,393 - Rru_A0526 0.50 +1.7 621,393 - Rru_A0526 0.50 -0.4 621,393 - Rru_A0526 0.50 -2.1 621,393 - Rru_A0526 0.50 -1.5 621,393 - Rru_A0526 0.50 +2.6 621,393 - Rru_A0526 0.50 +2.7 621,393 - Rru_A0526 0.50 +1.2 621,393 - Rru_A0526 0.50 -0.7 621,414 + Rru_A0526 0.51 +2.0 621,414 + Rru_A0526 0.51 +0.0 621,415 - Rru_A0526 0.51 +0.0 621,529 - Rru_A0526 0.59 +1.9 621,531 - Rru_A0526 0.59 +0.5 621,689 + Rru_A0526 0.71 -0.3 621,689 + Rru_A0526 0.71 -0.8 621,690 - Rru_A0526 0.71 -0.3 621,740 + Rru_A0526 0.74 +1.4 621,741 - Rru_A0526 0.74 -1.8 621,776 + Rru_A0526 0.77 +1.0 621,777 - Rru_A0526 0.77 +1.1 621,831 + Rru_A0526 0.80 -1.4 621,831 + Rru_A0526 0.80 -1.6 621,832 - Rru_A0526 0.81 +1.3 621,840 - Rru_A0526 0.81 +0.1 621,975 + -1.0 622,107 + -0.3 622,108 - -1.0 622,129 + -1.9 622,130 - -1.0 622,130 - -0.6 622,160 + +1.6 622,160 + -0.8 622,243 + +0.2 622,421 + Rru_A0527 0.47 -0.3 622,421 + Rru_A0527 0.47 -0.3 622,422 - Rru_A0527 0.47 +2.4 622,422 - Rru_A0527 0.47 +3.0 622,894 + Rru_A0528 0.23 +0.0 622,895 - Rru_A0528 0.23 +2.4 622,895 - Rru_A0528 0.23 -0.8 622,943 + Rru_A0528 0.26 +0.5 622,943 + Rru_A0528 0.26 -3.1 622,943 + Rru_A0528 0.26 +0.5 622,943 + Rru_A0528 0.26 -1.7 622,943 + Rru_A0528 0.26 -0.0 622,944 - Rru_A0528 0.26 -0.7 623,530 + Rru_A0528 0.73 -0.4 623,530 + Rru_A0528 0.73 +0.2 623,530 + Rru_A0528 0.73 +1.5 623,531 - Rru_A0528 0.73 +0.0 623,659 + Rru_A0528 0.83 -0.8 623,659 + Rru_A0528 0.83 -2.3 623,660 - Rru_A0528 0.83 -1.1
Or see this region's nucleotide sequence