Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0523 and Rru_A0524 are separated by 4 nucleotides Rru_A0524 and Rru_A0525 are separated by 33 nucleotides Rru_A0525 and Rru_A0526 are separated by 243 nucleotides
Rru_A0523: Rru_A0523 - Two component CheB methylesterase (NCBI), at 617,675 to 618,838
_A0523
Rru_A0524: Rru_A0524 - MCP methyltransferase, CheR-type (NCBI), at 618,843 to 619,685
_A0524
Rru_A0525: Rru_A0525 - Two component Transcriptional regulator, Winged helix family (NCBI), at 619,719 to 620,438
_A0525
Rru_A0526: Rru_A0526 - ATPase FliI/YscN (NCBI), at 620,682 to 622,109
_A0526
Position (kb) 618
619
620 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 617.925 kb on + strand, within Rru_A0523 at 617.925 kb on + strand, within Rru_A0523 at 617.926 kb on - strand, within Rru_A0523 at 617.926 kb on - strand, within Rru_A0523 at 617.926 kb on - strand, within Rru_A0523 at 618.373 kb on + strand, within Rru_A0523 at 618.373 kb on + strand, within Rru_A0523 at 618.373 kb on + strand, within Rru_A0523 at 618.373 kb on + strand, within Rru_A0523 at 618.374 kb on - strand, within Rru_A0523 at 618.374 kb on - strand, within Rru_A0523 at 618.374 kb on - strand, within Rru_A0523 at 618.409 kb on + strand, within Rru_A0523 at 618.410 kb on - strand, within Rru_A0523 at 618.410 kb on - strand, within Rru_A0523 at 618.475 kb on + strand, within Rru_A0523 at 618.476 kb on - strand, within Rru_A0523 at 618.476 kb on - strand, within Rru_A0523 at 618.479 kb on + strand, within Rru_A0523 at 618.479 kb on + strand, within Rru_A0523 at 618.479 kb on + strand, within Rru_A0523 at 618.479 kb on + strand, within Rru_A0523 at 618.479 kb on + strand, within Rru_A0523 at 618.479 kb on + strand, within Rru_A0523 at 618.479 kb on + strand, within Rru_A0523 at 618.480 kb on - strand, within Rru_A0523 at 618.480 kb on - strand, within Rru_A0523 at 618.480 kb on - strand, within Rru_A0523 at 618.480 kb on - strand, within Rru_A0523 at 618.480 kb on - strand, within Rru_A0523 at 618.480 kb on - strand, within Rru_A0523 at 618.498 kb on - strand, within Rru_A0523 at 618.498 kb on - strand, within Rru_A0523 at 618.614 kb on + strand, within Rru_A0523 at 618.614 kb on + strand, within Rru_A0523 at 618.809 kb on + strand at 618.809 kb on + strand at 618.810 kb on - strand at 618.810 kb on - strand at 618.888 kb on - strand at 618.888 kb on - strand at 618.921 kb on + strand at 618.921 kb on + strand at 618.922 kb on - strand at 618.922 kb on - strand at 619.115 kb on + strand, within Rru_A0524 at 619.188 kb on + strand, within Rru_A0524 at 619.189 kb on - strand, within Rru_A0524 at 619.189 kb on - strand, within Rru_A0524 at 619.302 kb on + strand, within Rru_A0524 at 619.414 kb on - strand, within Rru_A0524 at 619.414 kb on - strand, within Rru_A0524 at 619.414 kb on - strand, within Rru_A0524 at 619.414 kb on - strand, within Rru_A0524 at 619.563 kb on + strand, within Rru_A0524 at 619.563 kb on + strand, within Rru_A0524 at 619.564 kb on - strand, within Rru_A0524 at 619.635 kb on + strand at 619.784 kb on - strand at 619.784 kb on - strand at 619.784 kb on - strand at 619.811 kb on - strand, within Rru_A0525 at 619.811 kb on - strand, within Rru_A0525 at 619.811 kb on - strand, within Rru_A0525 at 619.904 kb on - strand, within Rru_A0525 at 619.975 kb on + strand, within Rru_A0525 at 619.976 kb on - strand, within Rru_A0525 at 619.976 kb on - strand, within Rru_A0525 at 620.126 kb on + strand, within Rru_A0525 at 620.126 kb on + strand, within Rru_A0525 at 620.146 kb on + strand, within Rru_A0525 at 620.147 kb on - strand, within Rru_A0525 at 620.147 kb on - strand, within Rru_A0525 at 620.147 kb on - strand, within Rru_A0525 at 620.147 kb on - strand, within Rru_A0525 at 620.305 kb on + strand, within Rru_A0525 at 620.306 kb on - strand, within Rru_A0525 at 620.503 kb on + strand at 620.570 kb on - strand at 620.579 kb on - strand at 620.662 kb on + strand at 620.662 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 617,925 + Rru_A0523 0.21 -0.7 617,925 + Rru_A0523 0.21 -2.3 617,926 - Rru_A0523 0.22 -2.2 617,926 - Rru_A0523 0.22 -0.7 617,926 - Rru_A0523 0.22 -1.9 618,373 + Rru_A0523 0.60 -0.4 618,373 + Rru_A0523 0.60 -1.2 618,373 + Rru_A0523 0.60 -0.9 618,373 + Rru_A0523 0.60 -2.5 618,374 - Rru_A0523 0.60 +1.2 618,374 - Rru_A0523 0.60 +2.0 618,374 - Rru_A0523 0.60 +0.4 618,409 + Rru_A0523 0.63 -0.2 618,410 - Rru_A0523 0.63 -2.8 618,410 - Rru_A0523 0.63 +0.5 618,475 + Rru_A0523 0.69 +0.9 618,476 - Rru_A0523 0.69 +0.2 618,476 - Rru_A0523 0.69 +0.4 618,479 + Rru_A0523 0.69 -1.7 618,479 + Rru_A0523 0.69 +1.7 618,479 + Rru_A0523 0.69 -0.8 618,479 + Rru_A0523 0.69 +0.4 618,479 + Rru_A0523 0.69 -2.6 618,479 + Rru_A0523 0.69 +0.4 618,479 + Rru_A0523 0.69 +0.4 618,480 - Rru_A0523 0.69 -2.1 618,480 - Rru_A0523 0.69 +0.3 618,480 - Rru_A0523 0.69 -1.0 618,480 - Rru_A0523 0.69 -0.0 618,480 - Rru_A0523 0.69 -0.2 618,480 - Rru_A0523 0.69 -2.0 618,498 - Rru_A0523 0.71 -3.8 618,498 - Rru_A0523 0.71 +0.4 618,614 + Rru_A0523 0.81 -0.2 618,614 + Rru_A0523 0.81 -1.1 618,809 + -0.3 618,809 + -1.2 618,810 - -0.3 618,810 - -0.2 618,888 - +0.9 618,888 - +0.4 618,921 + -3.2 618,921 + -1.2 618,922 - +0.6 618,922 - +1.8 619,115 + Rru_A0524 0.32 +1.0 619,188 + Rru_A0524 0.41 +2.0 619,189 - Rru_A0524 0.41 +0.6 619,189 - Rru_A0524 0.41 -0.3 619,302 + Rru_A0524 0.54 -3.2 619,414 - Rru_A0524 0.68 -0.9 619,414 - Rru_A0524 0.68 +1.0 619,414 - Rru_A0524 0.68 +0.0 619,414 - Rru_A0524 0.68 +2.0 619,563 + Rru_A0524 0.85 -0.5 619,563 + Rru_A0524 0.85 -2.0 619,564 - Rru_A0524 0.86 +1.0 619,635 + -0.0 619,784 - +0.0 619,784 - -2.4 619,784 - +0.4 619,811 - Rru_A0525 0.13 -1.3 619,811 - Rru_A0525 0.13 -1.1 619,811 - Rru_A0525 0.13 -2.8 619,904 - Rru_A0525 0.26 -2.5 619,975 + Rru_A0525 0.36 -1.9 619,976 - Rru_A0525 0.36 -2.1 619,976 - Rru_A0525 0.36 -4.5 620,126 + Rru_A0525 0.57 -2.1 620,126 + Rru_A0525 0.57 -0.6 620,146 + Rru_A0525 0.59 +0.9 620,147 - Rru_A0525 0.59 +2.0 620,147 - Rru_A0525 0.59 -3.0 620,147 - Rru_A0525 0.59 -2.4 620,147 - Rru_A0525 0.59 -1.4 620,305 + Rru_A0525 0.81 -2.9 620,306 - Rru_A0525 0.82 -2.8 620,503 + +0.6 620,570 - +1.4 620,579 - +2.6 620,662 + +0.9 620,662 + -0.9
Or see this region's nucleotide sequence