Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0519

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0518 and Rru_A0519 are separated by 47 nucleotidesRru_A0519 and Rru_A0520 are separated by 183 nucleotides Rru_A0518: Rru_A0518 - molybdenum cofactor biosynthesis protein (NCBI), at 611,792 to 612,889 _A0518 Rru_A0519: Rru_A0519 - hypothetical protein (NCBI), at 612,937 to 613,125 _A0519 Rru_A0520: Rru_A0520 - hypothetical protein (NCBI), at 613,309 to 613,983 _A0520 Position (kb) 612 613 614Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 611.979 kb on + strand, within Rru_A0518at 611.979 kb on + strand, within Rru_A0518at 611.979 kb on + strand, within Rru_A0518at 611.979 kb on + strand, within Rru_A0518at 611.979 kb on + strand, within Rru_A0518at 611.980 kb on - strand, within Rru_A0518at 611.980 kb on - strand, within Rru_A0518at 611.980 kb on - strand, within Rru_A0518at 611.980 kb on - strand, within Rru_A0518at 611.980 kb on - strand, within Rru_A0518at 612.031 kb on + strand, within Rru_A0518at 612.087 kb on + strand, within Rru_A0518at 612.087 kb on + strand, within Rru_A0518at 612.174 kb on + strand, within Rru_A0518at 612.174 kb on + strand, within Rru_A0518at 612.174 kb on + strand, within Rru_A0518at 612.174 kb on + strand, within Rru_A0518at 612.174 kb on + strand, within Rru_A0518at 612.174 kb on + strand, within Rru_A0518at 612.174 kb on + strand, within Rru_A0518at 612.175 kb on - strand, within Rru_A0518at 612.175 kb on - strand, within Rru_A0518at 612.237 kb on + strand, within Rru_A0518at 612.238 kb on - strand, within Rru_A0518at 612.238 kb on - strand, within Rru_A0518at 612.415 kb on + strand, within Rru_A0518at 612.416 kb on - strand, within Rru_A0518at 612.416 kb on - strand, within Rru_A0518at 612.416 kb on - strand, within Rru_A0518at 612.717 kb on + strand, within Rru_A0518at 612.718 kb on - strand, within Rru_A0518at 612.718 kb on - strand, within Rru_A0518at 612.762 kb on + strand, within Rru_A0518at 612.762 kb on + strand, within Rru_A0518at 612.762 kb on + strand, within Rru_A0518at 612.762 kb on + strand, within Rru_A0518at 612.763 kb on - strand, within Rru_A0518at 612.915 kb on + strandat 612.915 kb on + strandat 612.916 kb on - strandat 612.916 kb on - strandat 613.140 kb on - strandat 613.203 kb on - strandat 613.208 kb on + strandat 613.208 kb on + strandat 613.208 kb on + strandat 613.209 kb on - strandat 613.412 kb on + strand, within Rru_A0520at 613.412 kb on + strand, within Rru_A0520at 613.412 kb on + strand, within Rru_A0520at 613.412 kb on + strand, within Rru_A0520at 613.412 kb on + strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.413 kb on - strand, within Rru_A0520at 613.416 kb on + strand, within Rru_A0520at 613.416 kb on + strand, within Rru_A0520at 613.416 kb on + strand, within Rru_A0520at 613.416 kb on + strand, within Rru_A0520at 613.416 kb on + strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.417 kb on - strand, within Rru_A0520at 613.424 kb on + strand, within Rru_A0520at 613.424 kb on + strand, within Rru_A0520at 614.027 kb on + strandat 614.027 kb on + strandat 614.033 kb on - strandat 614.033 kb on - strandat 614.071 kb on + strandat 614.071 kb on + strandat 614.072 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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611,979 + Rru_A0518 0.17 -0.5
611,979 + Rru_A0518 0.17 -1.3
611,979 + Rru_A0518 0.17 +1.0
611,979 + Rru_A0518 0.17 -0.6
611,979 + Rru_A0518 0.17 -1.6
611,980 - Rru_A0518 0.17 +2.0
611,980 - Rru_A0518 0.17 -4.3
611,980 - Rru_A0518 0.17 -2.1
611,980 - Rru_A0518 0.17 -0.3
611,980 - Rru_A0518 0.17 -2.1
612,031 + Rru_A0518 0.22 -2.2
612,087 + Rru_A0518 0.27 +1.2
612,087 + Rru_A0518 0.27 -1.6
612,174 + Rru_A0518 0.35 +1.0
612,174 + Rru_A0518 0.35 +0.4
612,174 + Rru_A0518 0.35 +0.2
612,174 + Rru_A0518 0.35 +1.0
612,174 + Rru_A0518 0.35 +1.6
612,174 + Rru_A0518 0.35 -0.8
612,174 + Rru_A0518 0.35 +0.3
612,175 - Rru_A0518 0.35 +0.3
612,175 - Rru_A0518 0.35 +0.7
612,237 + Rru_A0518 0.41 -0.3
612,238 - Rru_A0518 0.41 -0.8
612,238 - Rru_A0518 0.41 +2.2
612,415 + Rru_A0518 0.57 +2.0
612,416 - Rru_A0518 0.57 +1.0
612,416 - Rru_A0518 0.57 +0.0
612,416 - Rru_A0518 0.57 -0.3
612,717 + Rru_A0518 0.84 -3.1
612,718 - Rru_A0518 0.84 +0.3
612,718 - Rru_A0518 0.84 -0.8
612,762 + Rru_A0518 0.88 -0.1
612,762 + Rru_A0518 0.88 +0.0
612,762 + Rru_A0518 0.88 -1.0
612,762 + Rru_A0518 0.88 +1.8
612,763 - Rru_A0518 0.88 +0.2
612,915 + +2.0
612,915 + -2.1
612,916 - -1.0
612,916 - -1.8
613,140 - -1.0
613,203 - -1.8
613,208 + -0.6
613,208 + +1.2
613,208 + +2.4
613,209 - -1.8
613,412 + Rru_A0520 0.15 +2.0
613,412 + Rru_A0520 0.15 -2.5
613,412 + Rru_A0520 0.15 -2.4
613,412 + Rru_A0520 0.15 -0.8
613,412 + Rru_A0520 0.15 -1.3
613,413 - Rru_A0520 0.15 -0.5
613,413 - Rru_A0520 0.15 +1.1
613,413 - Rru_A0520 0.15 -1.1
613,413 - Rru_A0520 0.15 +1.5
613,413 - Rru_A0520 0.15 +1.0
613,413 - Rru_A0520 0.15 -1.1
613,413 - Rru_A0520 0.15 -1.9
613,413 - Rru_A0520 0.15 -1.8
613,413 - Rru_A0520 0.15 -0.6
613,413 - Rru_A0520 0.15 -0.0
613,413 - Rru_A0520 0.15 -0.3
613,413 - Rru_A0520 0.15 -1.7
613,416 + Rru_A0520 0.16 -2.4
613,416 + Rru_A0520 0.16 +1.0
613,416 + Rru_A0520 0.16 -2.4
613,416 + Rru_A0520 0.16 +1.3
613,416 + Rru_A0520 0.16 -1.0
613,417 - Rru_A0520 0.16 +0.4
613,417 - Rru_A0520 0.16 -2.0
613,417 - Rru_A0520 0.16 -0.4
613,417 - Rru_A0520 0.16 +0.4
613,417 - Rru_A0520 0.16 +0.0
613,417 - Rru_A0520 0.16 +0.9
613,417 - Rru_A0520 0.16 +0.4
613,417 - Rru_A0520 0.16 -1.0
613,417 - Rru_A0520 0.16 +0.0
613,424 + Rru_A0520 0.17 +0.4
613,424 + Rru_A0520 0.17 -2.7
614,027 + +0.4
614,027 + +3.0
614,033 - -1.1
614,033 - -2.9
614,071 + -0.1
614,071 + -1.1
614,072 - +0.6

Or see this region's nucleotide sequence