Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0517

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0515 and Rru_A0516 are separated by 54 nucleotidesRru_A0516 and Rru_A0517 overlap by 4 nucleotidesRru_A0517 and Rru_A0518 are separated by 66 nucleotides Rru_A0515: Rru_A0515 - HAD-superfamily subfamily IIA hydrolase (NCBI), at 609,465 to 610,352 _A0515 Rru_A0516: Rru_A0516 - GCN5-related N-acetyltransferase (NCBI), at 610,407 to 610,919 _A0516 Rru_A0517: Rru_A0517 - NAD(+) kinase (NCBI), at 610,916 to 611,725 _A0517 Rru_A0518: Rru_A0518 - molybdenum cofactor biosynthesis protein (NCBI), at 611,792 to 612,889 _A0518 Position (kb) 610 611 612Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 609.930 kb on + strand, within Rru_A0515at 610.105 kb on - strand, within Rru_A0515at 610.175 kb on + strand, within Rru_A0515at 610.176 kb on - strand, within Rru_A0515at 610.181 kb on + strand, within Rru_A0515at 610.182 kb on - strand, within Rru_A0515at 610.350 kb on + strandat 610.587 kb on - strand, within Rru_A0516at 610.792 kb on - strand, within Rru_A0516at 611.726 kb on + strandat 611.726 kb on + strandat 611.726 kb on + strandat 611.726 kb on + strandat 611.726 kb on + strandat 611.727 kb on - strandat 611.727 kb on - strandat 611.727 kb on - strandat 611.727 kb on - strandat 611.727 kb on - strandat 611.729 kb on - strandat 611.729 kb on - strandat 611.729 kb on - strandat 611.729 kb on - strandat 611.729 kb on - strandat 611.729 kb on - strandat 611.979 kb on + strand, within Rru_A0518at 611.979 kb on + strand, within Rru_A0518at 611.979 kb on + strand, within Rru_A0518at 611.979 kb on + strand, within Rru_A0518at 611.979 kb on + strand, within Rru_A0518at 611.980 kb on - strand, within Rru_A0518at 611.980 kb on - strand, within Rru_A0518at 611.980 kb on - strand, within Rru_A0518at 611.980 kb on - strand, within Rru_A0518at 611.980 kb on - strand, within Rru_A0518at 612.031 kb on + strand, within Rru_A0518at 612.087 kb on + strand, within Rru_A0518at 612.087 kb on + strand, within Rru_A0518at 612.174 kb on + strand, within Rru_A0518at 612.174 kb on + strand, within Rru_A0518at 612.174 kb on + strand, within Rru_A0518at 612.174 kb on + strand, within Rru_A0518at 612.174 kb on + strand, within Rru_A0518at 612.174 kb on + strand, within Rru_A0518at 612.174 kb on + strand, within Rru_A0518at 612.175 kb on - strand, within Rru_A0518at 612.175 kb on - strand, within Rru_A0518at 612.237 kb on + strand, within Rru_A0518at 612.238 kb on - strand, within Rru_A0518at 612.238 kb on - strand, within Rru_A0518at 612.415 kb on + strand, within Rru_A0518at 612.416 kb on - strand, within Rru_A0518at 612.416 kb on - strand, within Rru_A0518at 612.416 kb on - strand, within Rru_A0518at 612.717 kb on + strand, within Rru_A0518at 612.718 kb on - strand, within Rru_A0518at 612.718 kb on - strand, within Rru_A0518

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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609,930 + Rru_A0515 0.52 +0.4
610,105 - Rru_A0515 0.72 -1.1
610,175 + Rru_A0515 0.80 -1.7
610,176 - Rru_A0515 0.80 -1.7
610,181 + Rru_A0515 0.81 -1.4
610,182 - Rru_A0515 0.81 -2.3
610,350 + -1.6
610,587 - Rru_A0516 0.35 -2.2
610,792 - Rru_A0516 0.75 -0.8
611,726 + +0.0
611,726 + -3.9
611,726 + -2.3
611,726 + -0.6
611,726 + -1.6
611,727 - -0.4
611,727 - +0.3
611,727 - +2.0
611,727 - -2.1
611,727 - -0.4
611,729 - -0.8
611,729 - -2.1
611,729 - -1.1
611,729 - -1.7
611,729 - +2.5
611,729 - +0.2
611,979 + Rru_A0518 0.17 -0.5
611,979 + Rru_A0518 0.17 -1.3
611,979 + Rru_A0518 0.17 +1.0
611,979 + Rru_A0518 0.17 -0.6
611,979 + Rru_A0518 0.17 -1.6
611,980 - Rru_A0518 0.17 +2.0
611,980 - Rru_A0518 0.17 -4.3
611,980 - Rru_A0518 0.17 -2.1
611,980 - Rru_A0518 0.17 -0.3
611,980 - Rru_A0518 0.17 -2.1
612,031 + Rru_A0518 0.22 -2.2
612,087 + Rru_A0518 0.27 +1.2
612,087 + Rru_A0518 0.27 -1.6
612,174 + Rru_A0518 0.35 +1.0
612,174 + Rru_A0518 0.35 +0.4
612,174 + Rru_A0518 0.35 +0.2
612,174 + Rru_A0518 0.35 +1.0
612,174 + Rru_A0518 0.35 +1.6
612,174 + Rru_A0518 0.35 -0.8
612,174 + Rru_A0518 0.35 +0.3
612,175 - Rru_A0518 0.35 +0.3
612,175 - Rru_A0518 0.35 +0.7
612,237 + Rru_A0518 0.41 -0.3
612,238 - Rru_A0518 0.41 -0.8
612,238 - Rru_A0518 0.41 +2.2
612,415 + Rru_A0518 0.57 +2.0
612,416 - Rru_A0518 0.57 +1.0
612,416 - Rru_A0518 0.57 +0.0
612,416 - Rru_A0518 0.57 -0.3
612,717 + Rru_A0518 0.84 -3.1
612,718 - Rru_A0518 0.84 +0.3
612,718 - Rru_A0518 0.84 -0.8

Or see this region's nucleotide sequence