Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0508

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0507 and Rru_A0508 are separated by 106 nucleotidesRru_A0508 and Rru_A0509 are separated by 264 nucleotidesRru_A0509 and Rru_A0510 are separated by 10 nucleotidesRru_A0510 and Rru_A0511 are separated by 12 nucleotides Rru_A0507: Rru_A0507 - Alpha amylase, catalytic region (NCBI), at 599,246 to 602,065 _A0507 Rru_A0508: Rru_A0508 - Aminotransferase, class IV (NCBI), at 602,172 to 603,056 _A0508 Rru_A0509: Rru_A0509 - hypothetical protein (NCBI), at 603,321 to 603,644 _A0509 Rru_A0510: Rru_A0510 - hypothetical protein (NCBI), at 603,655 to 603,951 _A0510 Rru_A0511: Rru_A0511 - DEAD/DEAH box helicase (NCBI), at 603,964 to 606,573 _A0511 Position (kb) 602 603 604Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 601.331 kb on + strand, within Rru_A0507at 601.331 kb on + strand, within Rru_A0507at 601.332 kb on - strand, within Rru_A0507at 601.332 kb on - strand, within Rru_A0507at 601.334 kb on - strand, within Rru_A0507at 601.334 kb on - strand, within Rru_A0507at 601.334 kb on - strand, within Rru_A0507at 601.334 kb on - strand, within Rru_A0507at 601.366 kb on + strand, within Rru_A0507at 601.366 kb on + strand, within Rru_A0507at 601.366 kb on + strand, within Rru_A0507at 601.367 kb on - strand, within Rru_A0507at 601.367 kb on - strand, within Rru_A0507at 601.395 kb on - strand, within Rru_A0507at 601.395 kb on - strand, within Rru_A0507at 601.395 kb on - strand, within Rru_A0507at 601.415 kb on + strand, within Rru_A0507at 601.416 kb on - strand, within Rru_A0507at 601.416 kb on - strand, within Rru_A0507at 601.525 kb on + strand, within Rru_A0507at 601.558 kb on + strand, within Rru_A0507at 601.563 kb on - strand, within Rru_A0507at 601.563 kb on - strand, within Rru_A0507at 601.934 kb on - strandat 602.063 kb on + strandat 602.064 kb on - strandat 602.104 kb on - strandat 602.174 kb on - strandat 602.203 kb on + strandat 602.228 kb on - strandat 602.284 kb on + strand, within Rru_A0508at 602.284 kb on + strand, within Rru_A0508at 602.284 kb on + strand, within Rru_A0508at 602.285 kb on - strand, within Rru_A0508at 602.285 kb on - strand, within Rru_A0508at 602.285 kb on - strand, within Rru_A0508at 602.468 kb on + strand, within Rru_A0508at 602.468 kb on + strand, within Rru_A0508at 602.471 kb on - strand, within Rru_A0508at 602.471 kb on - strand, within Rru_A0508at 602.628 kb on + strand, within Rru_A0508at 602.731 kb on + strand, within Rru_A0508at 602.731 kb on + strand, within Rru_A0508at 602.731 kb on + strand, within Rru_A0508at 602.732 kb on - strand, within Rru_A0508at 602.732 kb on - strand, within Rru_A0508at 602.749 kb on + strand, within Rru_A0508at 602.749 kb on + strand, within Rru_A0508at 602.750 kb on - strand, within Rru_A0508at 602.771 kb on - strand, within Rru_A0508at 602.915 kb on - strand, within Rru_A0508at 602.915 kb on - strand, within Rru_A0508at 602.949 kb on + strand, within Rru_A0508at 602.949 kb on + strand, within Rru_A0508at 602.950 kb on - strand, within Rru_A0508at 602.950 kb on - strand, within Rru_A0508at 603.010 kb on + strandat 603.010 kb on + strandat 603.011 kb on - strandat 603.012 kb on + strandat 603.013 kb on - strandat 603.013 kb on - strandat 603.131 kb on - strandat 603.245 kb on + strandat 603.245 kb on + strandat 603.246 kb on - strandat 603.249 kb on - strandat 603.249 kb on - strandat 603.254 kb on + strandat 603.254 kb on + strandat 603.279 kb on + strandat 603.279 kb on + strandat 603.279 kb on + strandat 603.280 kb on - strandat 603.320 kb on + strandat 603.321 kb on - strandat 603.321 kb on - strandat 603.510 kb on + strand, within Rru_A0509at 603.542 kb on + strand, within Rru_A0509at 603.543 kb on - strand, within Rru_A0509at 603.572 kb on + strand, within Rru_A0509at 603.573 kb on - strand, within Rru_A0509at 603.643 kb on - strandat 603.657 kb on - strandat 603.657 kb on - strandat 603.657 kb on - strandat 603.761 kb on + strand, within Rru_A0510at 603.761 kb on + strand, within Rru_A0510at 603.761 kb on + strand, within Rru_A0510at 603.761 kb on + strand, within Rru_A0510at 603.762 kb on - strand, within Rru_A0510at 603.863 kb on + strand, within Rru_A0510at 603.863 kb on + strand, within Rru_A0510at 603.864 kb on - strand, within Rru_A0510at 603.864 kb on - strand, within Rru_A0510at 603.887 kb on + strand, within Rru_A0510at 603.888 kb on - strand, within Rru_A0510at 603.888 kb on - strand, within Rru_A0510at 603.951 kb on + strandat 603.979 kb on + strandat 604.046 kb on - strandat 604.046 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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601,331 + Rru_A0507 0.74 +0.4
601,331 + Rru_A0507 0.74 +1.5
601,332 - Rru_A0507 0.74 +0.3
601,332 - Rru_A0507 0.74 +0.5
601,334 - Rru_A0507 0.74 -0.2
601,334 - Rru_A0507 0.74 +0.0
601,334 - Rru_A0507 0.74 -1.9
601,334 - Rru_A0507 0.74 -1.0
601,366 + Rru_A0507 0.75 -1.3
601,366 + Rru_A0507 0.75 +0.3
601,366 + Rru_A0507 0.75 +0.4
601,367 - Rru_A0507 0.75 -0.8
601,367 - Rru_A0507 0.75 -3.3
601,395 - Rru_A0507 0.76 -2.4
601,395 - Rru_A0507 0.76 -1.6
601,395 - Rru_A0507 0.76 -0.8
601,415 + Rru_A0507 0.77 -1.4
601,416 - Rru_A0507 0.77 -2.7
601,416 - Rru_A0507 0.77 +2.0
601,525 + Rru_A0507 0.81 -0.6
601,558 + Rru_A0507 0.82 +0.5
601,563 - Rru_A0507 0.82 -1.4
601,563 - Rru_A0507 0.82 +1.0
601,934 - +0.2
602,063 + +1.0
602,064 - -1.8
602,104 - +2.0
602,174 - -0.5
602,203 + +0.8
602,228 - -1.0
602,284 + Rru_A0508 0.13 +1.2
602,284 + Rru_A0508 0.13 +2.8
602,284 + Rru_A0508 0.13 -1.0
602,285 - Rru_A0508 0.13 -0.6
602,285 - Rru_A0508 0.13 -0.3
602,285 - Rru_A0508 0.13 +2.4
602,468 + Rru_A0508 0.33 -0.8
602,468 + Rru_A0508 0.33 +2.0
602,471 - Rru_A0508 0.34 -0.3
602,471 - Rru_A0508 0.34 +0.0
602,628 + Rru_A0508 0.52 -0.6
602,731 + Rru_A0508 0.63 -3.2
602,731 + Rru_A0508 0.63 -2.7
602,731 + Rru_A0508 0.63 -1.9
602,732 - Rru_A0508 0.63 -0.3
602,732 - Rru_A0508 0.63 +1.0
602,749 + Rru_A0508 0.65 +1.3
602,749 + Rru_A0508 0.65 +0.2
602,750 - Rru_A0508 0.65 +1.0
602,771 - Rru_A0508 0.68 -0.4
602,915 - Rru_A0508 0.84 +1.4
602,915 - Rru_A0508 0.84 -0.3
602,949 + Rru_A0508 0.88 +0.5
602,949 + Rru_A0508 0.88 -1.6
602,950 - Rru_A0508 0.88 -0.3
602,950 - Rru_A0508 0.88 +0.4
603,010 + -1.4
603,010 + -1.8
603,011 - -3.8
603,012 + +1.6
603,013 - -0.6
603,013 - -0.3
603,131 - +1.4
603,245 + +1.3
603,245 + +4.7
603,246 - -0.8
603,249 - -0.1
603,249 - +0.4
603,254 + -1.5
603,254 + +2.5
603,279 + -0.2
603,279 + -0.3
603,279 + +0.0
603,280 - +0.0
603,320 + +0.7
603,321 - -1.2
603,321 - -2.1
603,510 + Rru_A0509 0.58 +1.3
603,542 + Rru_A0509 0.68 -0.5
603,543 - Rru_A0509 0.69 -0.3
603,572 + Rru_A0509 0.77 +1.2
603,573 - Rru_A0509 0.78 +0.9
603,643 - +0.9
603,657 - +0.2
603,657 - -0.2
603,657 - +1.1
603,761 + Rru_A0510 0.36 -0.7
603,761 + Rru_A0510 0.36 +0.6
603,761 + Rru_A0510 0.36 +1.0
603,761 + Rru_A0510 0.36 +1.0
603,762 - Rru_A0510 0.36 +2.0
603,863 + Rru_A0510 0.70 -2.3
603,863 + Rru_A0510 0.70 +2.2
603,864 - Rru_A0510 0.70 -2.2
603,864 - Rru_A0510 0.70 +1.3
603,887 + Rru_A0510 0.78 +2.2
603,888 - Rru_A0510 0.78 +1.0
603,888 - Rru_A0510 0.78 +0.8
603,951 + -0.6
603,979 + +1.5
604,046 - +0.1
604,046 - +1.1

Or see this region's nucleotide sequence