Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0506

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0505 and Rru_A0506 overlap by 4 nucleotidesRru_A0506 and Rru_A0507 overlap by 4 nucleotides Rru_A0505: Rru_A0505 - Glycogen debranching enzyme GlgX (NCBI), at 595,288 to 597,432 _A0505 Rru_A0506: Rru_A0506 - Glycoside hydrolase (NCBI), at 597,429 to 599,249 _A0506 Rru_A0507: Rru_A0507 - Alpha amylase, catalytic region (NCBI), at 599,246 to 602,065 _A0507 Position (kb) 597 598 599 600Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 596.518 kb on + strand, within Rru_A0505at 596.526 kb on + strand, within Rru_A0505at 596.527 kb on - strand, within Rru_A0505at 596.690 kb on - strand, within Rru_A0505at 596.799 kb on + strand, within Rru_A0505at 596.800 kb on - strand, within Rru_A0505at 596.800 kb on - strand, within Rru_A0505at 596.917 kb on + strand, within Rru_A0505at 597.228 kb on + strandat 597.228 kb on + strandat 597.228 kb on + strandat 597.306 kb on + strandat 597.715 kb on - strand, within Rru_A0506at 597.768 kb on + strand, within Rru_A0506at 597.768 kb on + strand, within Rru_A0506at 597.807 kb on + strand, within Rru_A0506at 597.807 kb on + strand, within Rru_A0506at 597.807 kb on + strand, within Rru_A0506at 597.807 kb on + strand, within Rru_A0506at 597.807 kb on + strand, within Rru_A0506at 597.808 kb on - strand, within Rru_A0506at 597.808 kb on - strand, within Rru_A0506at 597.808 kb on - strand, within Rru_A0506at 597.808 kb on - strand, within Rru_A0506at 597.909 kb on + strand, within Rru_A0506at 597.910 kb on - strand, within Rru_A0506at 597.946 kb on - strand, within Rru_A0506at 598.024 kb on - strand, within Rru_A0506at 598.026 kb on - strand, within Rru_A0506at 598.026 kb on - strand, within Rru_A0506at 598.026 kb on - strand, within Rru_A0506at 598.062 kb on + strand, within Rru_A0506at 598.180 kb on - strand, within Rru_A0506at 598.180 kb on - strand, within Rru_A0506at 598.242 kb on - strand, within Rru_A0506at 598.378 kb on - strand, within Rru_A0506at 598.400 kb on + strand, within Rru_A0506at 598.400 kb on + strand, within Rru_A0506at 598.401 kb on - strand, within Rru_A0506at 598.446 kb on + strand, within Rru_A0506at 598.446 kb on + strand, within Rru_A0506at 598.447 kb on - strand, within Rru_A0506at 598.449 kb on + strand, within Rru_A0506at 598.450 kb on - strand, within Rru_A0506at 598.450 kb on - strand, within Rru_A0506at 598.512 kb on + strand, within Rru_A0506at 598.513 kb on - strand, within Rru_A0506at 598.645 kb on + strand, within Rru_A0506at 598.645 kb on + strand, within Rru_A0506at 598.645 kb on + strand, within Rru_A0506at 598.646 kb on - strand, within Rru_A0506at 598.646 kb on - strand, within Rru_A0506at 598.646 kb on - strand, within Rru_A0506at 599.262 kb on - strandat 599.262 kb on - strandat 599.279 kb on + strandat 599.280 kb on - strandat 599.280 kb on - strandat 599.336 kb on + strandat 599.336 kb on + strandat 599.336 kb on + strandat 599.366 kb on + strandat 599.411 kb on + strandat 599.411 kb on + strandat 599.412 kb on - strandat 599.412 kb on - strandat 599.554 kb on + strand, within Rru_A0507at 599.609 kb on + strand, within Rru_A0507at 599.609 kb on + strand, within Rru_A0507at 599.684 kb on + strand, within Rru_A0507at 599.685 kb on - strand, within Rru_A0507at 599.792 kb on + strand, within Rru_A0507at 599.793 kb on - strand, within Rru_A0507at 599.793 kb on - strand, within Rru_A0507at 599.793 kb on - strand, within Rru_A0507at 599.800 kb on + strand, within Rru_A0507at 599.800 kb on + strand, within Rru_A0507at 599.800 kb on + strand, within Rru_A0507at 599.801 kb on - strand, within Rru_A0507at 600.111 kb on - strand, within Rru_A0507

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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596,518 + Rru_A0505 0.57 -1.0
596,526 + Rru_A0505 0.58 +0.3
596,527 - Rru_A0505 0.58 -1.0
596,690 - Rru_A0505 0.65 -0.6
596,799 + Rru_A0505 0.70 -0.3
596,800 - Rru_A0505 0.70 -1.3
596,800 - Rru_A0505 0.70 -1.7
596,917 + Rru_A0505 0.76 -0.6
597,228 + -1.3
597,228 + -2.3
597,228 + +0.2
597,306 + -1.0
597,715 - Rru_A0506 0.16 +0.0
597,768 + Rru_A0506 0.19 -0.6
597,768 + Rru_A0506 0.19 +1.2
597,807 + Rru_A0506 0.21 +0.5
597,807 + Rru_A0506 0.21 +1.0
597,807 + Rru_A0506 0.21 +0.0
597,807 + Rru_A0506 0.21 +0.1
597,807 + Rru_A0506 0.21 -0.8
597,808 - Rru_A0506 0.21 -0.2
597,808 - Rru_A0506 0.21 +1.6
597,808 - Rru_A0506 0.21 +0.6
597,808 - Rru_A0506 0.21 -2.7
597,909 + Rru_A0506 0.26 -0.9
597,910 - Rru_A0506 0.26 -1.8
597,946 - Rru_A0506 0.28 -2.8
598,024 - Rru_A0506 0.33 -1.0
598,026 - Rru_A0506 0.33 +1.0
598,026 - Rru_A0506 0.33 +1.0
598,026 - Rru_A0506 0.33 +1.3
598,062 + Rru_A0506 0.35 -0.3
598,180 - Rru_A0506 0.41 +0.4
598,180 - Rru_A0506 0.41 -0.7
598,242 - Rru_A0506 0.45 +1.2
598,378 - Rru_A0506 0.52 -0.5
598,400 + Rru_A0506 0.53 +1.2
598,400 + Rru_A0506 0.53 -2.6
598,401 - Rru_A0506 0.53 -0.3
598,446 + Rru_A0506 0.56 -2.7
598,446 + Rru_A0506 0.56 +0.2
598,447 - Rru_A0506 0.56 -0.3
598,449 + Rru_A0506 0.56 -2.1
598,450 - Rru_A0506 0.56 +1.3
598,450 - Rru_A0506 0.56 +1.6
598,512 + Rru_A0506 0.59 -2.4
598,513 - Rru_A0506 0.60 +0.4
598,645 + Rru_A0506 0.67 +1.5
598,645 + Rru_A0506 0.67 -0.0
598,645 + Rru_A0506 0.67 +3.0
598,646 - Rru_A0506 0.67 -1.1
598,646 - Rru_A0506 0.67 +0.5
598,646 - Rru_A0506 0.67 +0.4
599,262 - +2.0
599,262 - -2.0
599,279 + +0.8
599,280 - +1.6
599,280 - +0.6
599,336 + +0.1
599,336 + +2.2
599,336 + -3.1
599,366 + -1.1
599,411 + +0.0
599,411 + -1.0
599,412 - -1.0
599,412 - -3.8
599,554 + Rru_A0507 0.11 -0.3
599,609 + Rru_A0507 0.13 +1.9
599,609 + Rru_A0507 0.13 -1.7
599,684 + Rru_A0507 0.16 +3.6
599,685 - Rru_A0507 0.16 -0.3
599,792 + Rru_A0507 0.19 -2.0
599,793 - Rru_A0507 0.19 +0.0
599,793 - Rru_A0507 0.19 -1.8
599,793 - Rru_A0507 0.19 +1.1
599,800 + Rru_A0507 0.20 +0.3
599,800 + Rru_A0507 0.20 -0.3
599,800 + Rru_A0507 0.20 +0.8
599,801 - Rru_A0507 0.20 +2.8
600,111 - Rru_A0507 0.31 -1.1

Or see this region's nucleotide sequence