Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0502 and Rru_A0503 are separated by 598 nucleotides Rru_A0503 and Rru_A0504 are separated by 294 nucleotides
Rru_A0502: Rru_A0502 - hypothetical protein (NCBI), at 587,340 to 591,317
_A0502
Rru_A0503: Rru_A0503 - Lysine--tRNA ligase (NCBI), at 591,916 to 593,568
_A0503
Rru_A0504: Rru_A0504 - Peptidase M23B (NCBI), at 593,863 to 595,122
_A0504
Position (kb) 591
592
593
594 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 590.952 kb on + strand at 590.952 kb on + strand at 590.952 kb on + strand at 590.952 kb on + strand at 590.952 kb on + strand at 590.952 kb on + strand at 590.953 kb on - strand at 590.953 kb on - strand at 591.009 kb on + strand at 591.010 kb on - strand at 591.225 kb on - strand at 591.285 kb on - strand at 591.333 kb on - strand at 591.397 kb on + strand at 591.397 kb on + strand at 591.398 kb on - strand at 591.480 kb on - strand at 591.502 kb on - strand at 591.502 kb on - strand at 591.502 kb on - strand at 591.502 kb on - strand at 591.536 kb on + strand at 591.537 kb on - strand at 591.537 kb on - strand at 591.537 kb on - strand at 591.537 kb on - strand at 591.562 kb on - strand at 591.562 kb on - strand at 591.691 kb on + strand at 591.692 kb on - strand at 591.760 kb on + strand at 591.760 kb on + strand at 591.761 kb on - strand at 591.761 kb on - strand at 591.771 kb on + strand at 591.896 kb on + strand at 593.584 kb on + strand at 593.584 kb on + strand at 593.585 kb on - strand at 593.588 kb on + strand at 593.589 kb on - strand at 593.790 kb on + strand at 593.791 kb on - strand at 594.549 kb on + strand, within Rru_A0504
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 590,952 + -2.6 590,952 + -0.4 590,952 + +0.0 590,952 + +0.4 590,952 + -0.8 590,952 + +5.0 590,953 - -3.4 590,953 - -1.2 591,009 + -1.8 591,010 - +0.4 591,225 - +1.0 591,285 - -0.4 591,333 - +3.0 591,397 + -2.4 591,397 + +0.8 591,398 - +0.8 591,480 - -2.1 591,502 - -1.1 591,502 - -0.9 591,502 - -2.2 591,502 - -0.8 591,536 + +0.4 591,537 - +0.4 591,537 - -2.4 591,537 - -1.7 591,537 - -1.1 591,562 - -3.0 591,562 - -0.4 591,691 + -2.0 591,692 - -0.9 591,760 + -0.2 591,760 + +2.9 591,761 - +0.5 591,761 - -1.1 591,771 + +0.1 591,896 + -0.3 593,584 + -2.1 593,584 + -1.4 593,585 - -0.5 593,588 + -1.7 593,589 - -2.1 593,790 + -0.7 593,791 - -1.6 594,549 + Rru_A0504 0.54 +0.4
Or see this region's nucleotide sequence