Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0488 and Rru_A0489 are separated by 11 nucleotides Rru_A0489 and Rru_A0490 overlap by 11 nucleotides Rru_A0490 and Rru_A0491 overlap by 4 nucleotides Rru_A0491 and Rru_A0492 overlap by 26 nucleotides
Rru_A0488: Rru_A0488 - TonB-dependent receptor (NCBI), at 573,218 to 575,266
_A0488
Rru_A0489: Rru_A0489 - Periplasmic binding protein (NCBI), at 575,278 to 576,222
_A0489
Rru_A0490: Rru_A0490 - transport system permease protein (NCBI), at 576,212 to 577,213
_A0490
Rru_A0491: Rru_A0491 - ABC transporter component (NCBI), at 577,210 to 578,013
_A0491
Rru_A0492: Rru_A0492 - hypothetical protein (NCBI), at 577,988 to 578,740
_A0492
Position (kb) 576
577
578 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 575.264 kb on + strand at 575.264 kb on + strand at 575.264 kb on + strand at 575.819 kb on - strand, within Rru_A0489 at 575.819 kb on - strand, within Rru_A0489 at 575.819 kb on - strand, within Rru_A0489 at 575.820 kb on + strand, within Rru_A0489 at 575.820 kb on + strand, within Rru_A0489 at 575.820 kb on + strand, within Rru_A0489 at 575.820 kb on + strand, within Rru_A0489 at 575.820 kb on + strand, within Rru_A0489 at 575.821 kb on - strand, within Rru_A0489 at 575.821 kb on - strand, within Rru_A0489 at 575.821 kb on - strand, within Rru_A0489 at 576.455 kb on + strand, within Rru_A0490 at 576.533 kb on + strand, within Rru_A0490 at 576.534 kb on - strand, within Rru_A0490 at 576.534 kb on - strand, within Rru_A0490 at 576.536 kb on - strand, within Rru_A0490 at 577.210 kb on - strand at 577.210 kb on - strand at 577.210 kb on - strand at 577.210 kb on - strand at 577.447 kb on + strand, within Rru_A0491 at 577.447 kb on + strand, within Rru_A0491 at 577.447 kb on + strand, within Rru_A0491 at 577.447 kb on + strand, within Rru_A0491 at 577.448 kb on - strand, within Rru_A0491 at 577.448 kb on - strand, within Rru_A0491 at 577.448 kb on - strand, within Rru_A0491 at 577.448 kb on - strand, within Rru_A0491 at 577.824 kb on + strand, within Rru_A0491 at 577.824 kb on + strand, within Rru_A0491 at 577.825 kb on - strand, within Rru_A0491 at 577.825 kb on - strand, within Rru_A0491 at 577.912 kb on + strand, within Rru_A0491 at 577.912 kb on + strand, within Rru_A0491 at 577.989 kb on + strand at 577.989 kb on + strand at 577.990 kb on - strand at 578.047 kb on - strand at 578.080 kb on + strand, within Rru_A0492 at 578.095 kb on - strand, within Rru_A0492
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 575,264 + +2.0 575,264 + -1.3 575,264 + -0.2 575,819 - Rru_A0489 0.57 -0.3 575,819 - Rru_A0489 0.57 -1.3 575,819 - Rru_A0489 0.57 -0.8 575,820 + Rru_A0489 0.57 -1.1 575,820 + Rru_A0489 0.57 -0.5 575,820 + Rru_A0489 0.57 -3.9 575,820 + Rru_A0489 0.57 +0.4 575,820 + Rru_A0489 0.57 -3.8 575,821 - Rru_A0489 0.57 +0.1 575,821 - Rru_A0489 0.57 +0.3 575,821 - Rru_A0489 0.57 -3.6 576,455 + Rru_A0490 0.24 +2.0 576,533 + Rru_A0490 0.32 -2.5 576,534 - Rru_A0490 0.32 -3.1 576,534 - Rru_A0490 0.32 +2.0 576,536 - Rru_A0490 0.32 -4.0 577,210 - +0.0 577,210 - +1.1 577,210 - -1.3 577,210 - +0.2 577,447 + Rru_A0491 0.29 +1.0 577,447 + Rru_A0491 0.29 -1.8 577,447 + Rru_A0491 0.29 -0.8 577,447 + Rru_A0491 0.29 +1.0 577,448 - Rru_A0491 0.30 -1.4 577,448 - Rru_A0491 0.30 -1.1 577,448 - Rru_A0491 0.30 -0.3 577,448 - Rru_A0491 0.30 -1.0 577,824 + Rru_A0491 0.76 +0.0 577,824 + Rru_A0491 0.76 +1.6 577,825 - Rru_A0491 0.76 +0.0 577,825 - Rru_A0491 0.76 +0.0 577,912 + Rru_A0491 0.87 -1.3 577,912 + Rru_A0491 0.87 -4.4 577,989 + -0.3 577,989 + -0.5 577,990 - +1.9 578,047 - +0.4 578,080 + Rru_A0492 0.12 -1.7 578,095 - Rru_A0492 0.14 +1.0
Or see this region's nucleotide sequence