Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0484 and Rru_A0485 are separated by 419 nucleotides Rru_A0485 and Rru_A0486 overlap by 4 nucleotides
Rru_A0484: Rru_A0484 - hypothetical protein (NCBI), at 567,488 to 568,483
_A0484
Rru_A0485: Rru_A0485 - Magnesium chelatase ATPase subunit I (NCBI), at 568,903 to 570,087
_A0485
Rru_A0486: Rru_A0486 - von Willebrand factor, type A (NCBI), at 570,084 to 571,901
_A0486
Position (kb) 568
569
570
571 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 567.957 kb on + strand, within Rru_A0484 at 568.027 kb on - strand, within Rru_A0484 at 568.154 kb on - strand, within Rru_A0484 at 568.154 kb on - strand, within Rru_A0484 at 568.156 kb on - strand, within Rru_A0484 at 568.218 kb on + strand, within Rru_A0484 at 568.309 kb on + strand, within Rru_A0484 at 568.309 kb on + strand, within Rru_A0484 at 568.310 kb on - strand, within Rru_A0484 at 568.312 kb on - strand, within Rru_A0484 at 568.414 kb on - strand at 568.414 kb on - strand at 568.728 kb on + strand at 568.729 kb on - strand at 568.729 kb on - strand at 568.761 kb on + strand at 568.804 kb on + strand at 568.804 kb on + strand at 568.804 kb on + strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.910 kb on + strand at 568.943 kb on + strand at 568.943 kb on + strand at 568.943 kb on + strand at 568.943 kb on + strand at 568.944 kb on - strand at 568.944 kb on - strand at 569.028 kb on - strand, within Rru_A0485 at 569.185 kb on - strand, within Rru_A0485 at 569.434 kb on + strand, within Rru_A0485 at 569.435 kb on - strand, within Rru_A0485 at 569.476 kb on + strand, within Rru_A0485 at 569.476 kb on + strand, within Rru_A0485 at 569.476 kb on + strand, within Rru_A0485 at 569.477 kb on - strand, within Rru_A0485 at 569.477 kb on - strand, within Rru_A0485 at 569.477 kb on - strand, within Rru_A0485 at 569.479 kb on - strand, within Rru_A0485 at 569.731 kb on + strand, within Rru_A0485 at 569.732 kb on - strand, within Rru_A0485 at 569.732 kb on - strand, within Rru_A0485 at 569.845 kb on - strand, within Rru_A0485 at 570.042 kb on + strand at 570.043 kb on - strand at 570.225 kb on + strand at 570.226 kb on - strand at 570.226 kb on - strand at 570.278 kb on + strand, within Rru_A0486 at 570.278 kb on + strand, within Rru_A0486 at 570.278 kb on + strand, within Rru_A0486 at 570.278 kb on + strand, within Rru_A0486 at 570.278 kb on + strand, within Rru_A0486 at 570.278 kb on + strand, within Rru_A0486 at 570.278 kb on + strand, within Rru_A0486 at 570.279 kb on - strand, within Rru_A0486 at 570.279 kb on - strand, within Rru_A0486 at 570.279 kb on - strand, within Rru_A0486 at 570.641 kb on + strand, within Rru_A0486
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 567,957 + Rru_A0484 0.47 +5.7 568,027 - Rru_A0484 0.54 +7.1 568,154 - Rru_A0484 0.67 +4.4 568,154 - Rru_A0484 0.67 +7.4 568,156 - Rru_A0484 0.67 +5.7 568,218 + Rru_A0484 0.73 +7.5 568,309 + Rru_A0484 0.82 +6.4 568,309 + Rru_A0484 0.82 +7.0 568,310 - Rru_A0484 0.83 +4.3 568,312 - Rru_A0484 0.83 +7.4 568,414 - +7.9 568,414 - +6.4 568,728 + +6.0 568,729 - -2.0 568,729 - -1.0 568,761 + +3.8 568,804 + -1.8 568,804 + +2.5 568,804 + +6.6 568,805 - +2.0 568,805 - -2.7 568,805 - -1.0 568,805 - -1.6 568,805 - -1.0 568,805 - -1.8 568,910 + +0.2 568,943 + +0.3 568,943 + -1.0 568,943 + +3.1 568,943 + -0.3 568,944 - -1.1 568,944 - -4.4 569,028 - Rru_A0485 0.11 -3.7 569,185 - Rru_A0485 0.24 -0.6 569,434 + Rru_A0485 0.45 -3.6 569,435 - Rru_A0485 0.45 -1.6 569,476 + Rru_A0485 0.48 -1.7 569,476 + Rru_A0485 0.48 -3.3 569,476 + Rru_A0485 0.48 -1.8 569,477 - Rru_A0485 0.48 -0.6 569,477 - Rru_A0485 0.48 -1.1 569,477 - Rru_A0485 0.48 -4.0 569,479 - Rru_A0485 0.49 -2.7 569,731 + Rru_A0485 0.70 -0.8 569,732 - Rru_A0485 0.70 -4.3 569,732 - Rru_A0485 0.70 -3.0 569,845 - Rru_A0485 0.79 -2.4 570,042 + -3.5 570,043 - -3.4 570,225 + -3.7 570,226 - +1.2 570,226 - -3.8 570,278 + Rru_A0486 0.11 -3.1 570,278 + Rru_A0486 0.11 -1.7 570,278 + Rru_A0486 0.11 -0.6 570,278 + Rru_A0486 0.11 -0.8 570,278 + Rru_A0486 0.11 -0.6 570,278 + Rru_A0486 0.11 -2.2 570,278 + Rru_A0486 0.11 -2.2 570,279 - Rru_A0486 0.11 -1.3 570,279 - Rru_A0486 0.11 -2.5 570,279 - Rru_A0486 0.11 -2.5 570,641 + Rru_A0486 0.31 -3.3
Or see this region's nucleotide sequence