Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0471 and Rru_A0472 are separated by 192 nucleotides Rru_A0472 and Rru_A0473 are separated by 2 nucleotides Rru_A0473 and Rru_A0474 are separated by 40 nucleotides
Rru_A0471: Rru_A0471 - Rod shape-determining protein MreC, subtype (NCBI), at 553,019 to 553,876
_A0471
Rru_A0472: Rru_A0472 - hypothetical protein (NCBI), at 554,069 to 554,623
_A0472
Rru_A0473: Rru_A0473 - Peptidoglycan glycosyltransferase (NCBI), at 554,626 to 556,671
_A0473
Rru_A0474: Rru_A0474 - Zinc-containing alcohol dehydrogenase superfamily (NCBI), at 556,712 to 557,734
_A0474
Position (kb) 554
555
556
557 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 553.970 kb on + strand at 553.970 kb on + strand at 553.996 kb on + strand at 553.996 kb on + strand at 553.996 kb on + strand at 553.996 kb on + strand at 553.996 kb on + strand at 553.997 kb on - strand at 554.017 kb on + strand at 554.621 kb on + strand at 556.847 kb on - strand, within Rru_A0474 at 556.847 kb on - strand, within Rru_A0474 at 556.847 kb on - strand, within Rru_A0474 at 556.902 kb on - strand, within Rru_A0474 at 556.976 kb on - strand, within Rru_A0474 at 556.976 kb on - strand, within Rru_A0474 at 556.978 kb on - strand, within Rru_A0474 at 556.978 kb on - strand, within Rru_A0474 at 556.978 kb on - strand, within Rru_A0474 at 556.978 kb on - strand, within Rru_A0474 at 556.978 kb on - strand, within Rru_A0474 at 557.070 kb on + strand, within Rru_A0474 at 557.070 kb on + strand, within Rru_A0474 at 557.071 kb on - strand, within Rru_A0474 at 557.169 kb on + strand, within Rru_A0474 at 557.170 kb on - strand, within Rru_A0474 at 557.170 kb on - strand, within Rru_A0474 at 557.322 kb on + strand, within Rru_A0474 at 557.322 kb on + strand, within Rru_A0474 at 557.322 kb on + strand, within Rru_A0474 at 557.322 kb on + strand, within Rru_A0474 at 557.322 kb on + strand, within Rru_A0474 at 557.323 kb on - strand, within Rru_A0474 at 557.323 kb on - strand, within Rru_A0474 at 557.323 kb on - strand, within Rru_A0474 at 557.422 kb on - strand, within Rru_A0474 at 557.422 kb on - strand, within Rru_A0474 at 557.438 kb on - strand, within Rru_A0474 at 557.439 kb on + strand, within Rru_A0474 at 557.439 kb on + strand, within Rru_A0474 at 557.440 kb on - strand, within Rru_A0474 at 557.544 kb on + strand, within Rru_A0474 at 557.575 kb on + strand, within Rru_A0474 at 557.575 kb on + strand, within Rru_A0474 at 557.575 kb on + strand, within Rru_A0474 at 557.575 kb on + strand, within Rru_A0474 at 557.576 kb on - strand, within Rru_A0474 at 557.576 kb on - strand, within Rru_A0474 at 557.577 kb on + strand, within Rru_A0474 at 557.577 kb on + strand, within Rru_A0474 at 557.577 kb on + strand, within Rru_A0474 at 557.577 kb on + strand, within Rru_A0474 at 557.577 kb on + strand, within Rru_A0474 at 557.578 kb on - strand, within Rru_A0474 at 557.578 kb on - strand, within Rru_A0474 at 557.578 kb on - strand, within Rru_A0474 at 557.578 kb on - strand, within Rru_A0474 at 557.578 kb on - strand, within Rru_A0474
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 553,970 + -2.1 553,970 + -0.0 553,996 + +0.7 553,996 + -0.6 553,996 + -1.5 553,996 + +0.1 553,996 + -0.6 553,997 - -0.3 554,017 + -1.7 554,621 + -0.3 556,847 - Rru_A0474 0.13 +2.7 556,847 - Rru_A0474 0.13 +1.6 556,847 - Rru_A0474 0.13 -2.0 556,902 - Rru_A0474 0.19 +1.3 556,976 - Rru_A0474 0.26 -1.7 556,976 - Rru_A0474 0.26 -0.3 556,978 - Rru_A0474 0.26 +0.4 556,978 - Rru_A0474 0.26 -0.2 556,978 - Rru_A0474 0.26 -1.1 556,978 - Rru_A0474 0.26 +3.0 556,978 - Rru_A0474 0.26 +0.4 557,070 + Rru_A0474 0.35 +1.8 557,070 + Rru_A0474 0.35 +2.0 557,071 - Rru_A0474 0.35 +1.5 557,169 + Rru_A0474 0.45 +1.0 557,170 - Rru_A0474 0.45 +0.4 557,170 - Rru_A0474 0.45 -0.0 557,322 + Rru_A0474 0.60 +0.7 557,322 + Rru_A0474 0.60 -4.8 557,322 + Rru_A0474 0.60 -0.8 557,322 + Rru_A0474 0.60 +0.9 557,322 + Rru_A0474 0.60 +0.3 557,323 - Rru_A0474 0.60 +1.2 557,323 - Rru_A0474 0.60 -2.2 557,323 - Rru_A0474 0.60 -1.8 557,422 - Rru_A0474 0.69 +0.6 557,422 - Rru_A0474 0.69 +2.0 557,438 - Rru_A0474 0.71 -3.0 557,439 + Rru_A0474 0.71 +1.0 557,439 + Rru_A0474 0.71 -2.7 557,440 - Rru_A0474 0.71 +1.3 557,544 + Rru_A0474 0.81 -0.8 557,575 + Rru_A0474 0.84 -0.9 557,575 + Rru_A0474 0.84 -1.2 557,575 + Rru_A0474 0.84 -1.4 557,575 + Rru_A0474 0.84 -0.1 557,576 - Rru_A0474 0.84 +0.4 557,576 - Rru_A0474 0.84 +0.5 557,577 + Rru_A0474 0.85 -0.3 557,577 + Rru_A0474 0.85 +2.0 557,577 + Rru_A0474 0.85 -0.3 557,577 + Rru_A0474 0.85 +0.5 557,577 + Rru_A0474 0.85 -0.4 557,578 - Rru_A0474 0.85 +2.5 557,578 - Rru_A0474 0.85 -1.2 557,578 - Rru_A0474 0.85 +0.3 557,578 - Rru_A0474 0.85 -1.0 557,578 - Rru_A0474 0.85 -2.0
Or see this region's nucleotide sequence