Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0471

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0470 and Rru_A0471 are separated by 151 nucleotidesRru_A0471 and Rru_A0472 are separated by 192 nucleotidesRru_A0472 and Rru_A0473 are separated by 2 nucleotides Rru_A0470: Rru_A0470 - Cell shape determining protein MreB/Mrl (NCBI), at 551,839 to 552,867 _A0470 Rru_A0471: Rru_A0471 - Rod shape-determining protein MreC, subtype (NCBI), at 553,019 to 553,876 _A0471 Rru_A0472: Rru_A0472 - hypothetical protein (NCBI), at 554,069 to 554,623 _A0472 Rru_A0473: Rru_A0473 - Peptidoglycan glycosyltransferase (NCBI), at 554,626 to 556,671 _A0473 Position (kb) 553 554Strain fitness (log2 ratio) -2 -1 0 1 2 3at 552.862 kb on + strandat 552.862 kb on + strandat 552.862 kb on + strandat 552.862 kb on + strandat 553.970 kb on + strandat 553.970 kb on + strandat 553.996 kb on + strandat 553.996 kb on + strandat 553.996 kb on + strandat 553.996 kb on + strandat 553.996 kb on + strandat 553.997 kb on - strandat 554.017 kb on + strandat 554.621 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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552,862 + +2.3
552,862 + +3.7
552,862 + +3.0
552,862 + -1.3
553,970 + -2.1
553,970 + -0.0
553,996 + +0.7
553,996 + -0.6
553,996 + -1.5
553,996 + +0.1
553,996 + -0.6
553,997 - -0.3
554,017 + -1.7
554,621 + -0.3

Or see this region's nucleotide sequence